I'm excited to introduce our new workflow for detecting endogenous viral elements - HI-FEVER. 🖥️🧬 academic.oup.com/bioinformati... 🧵 Big thanks to @ariskatzourakis.bsky.social, @humanceae.bsky.social, José Gabriel and Cormac for bringing this from conception to fruition!

HI-FEVER: a Nextflow pipeline for the high-throughput discovery and annotation of endogenous viral elements

AbstractSummary. Endogenous viral elements (EVEs) offer valuable insights into virus and host evolution, but their detection remains computationally and bi

academic.oup.com

Friends, for something to be open source, we need to see 1. The data it was trained & evaluated on 2. The code 3. Model architecture 4. Model weights. DeepSeek only gives 3, 4. And I'll see the day that anyone gives us #1 without being forced to do so, because all of them are stealing data.

Cami just published the cool software she and her collaborators developed for analyzing (and understanding) large and diverse sequencing data 🖥️🧬✨!

Camila Duitama@camiladuitama.bsky.social · 2y ago

🧬 Excited to share our latest work, MUSET 🌭, a new tool for creating abundance unitig matrices from sequencing data. It was published yesterday in Oxford Bioinformatics if you want to have a look👀 : academic.oup.com/bioinformati... Let's break it down:

T. Rex Evolution xkcd.com/3042