@joeecker.bsky.social
a little secret- the actual amount of data produced and filtered using the Drosophila cell atlas standards was >800k but we more stringently filtered it to ~430k for all downstream analyses. We plan to make this additional 400k data availability in NCBI GEO and here arabidopsisdevatlas.salk.edu
arabidopsisdevatlas.salk.edu
Natanella Illouz-Eliaz@natanellae.bsky.social · last yr.From a gene’s single cell expression–through spatial localization–to novel function, and beyond! Now out @natplants.nature.com We built a comprehensive spatial-transcriptomic atlas of Arabidopsis, revealing cell-type identities across organs in unprecedented detail www.nature.com/articles/s41...
Tremendous work by the extremely talented postdocs @TrALEE_Sci @NatanellaE @nobolly .Thank you for putting in a major effort on this “side project” to develop a powerful community resource arabidopsisdevatlas.salk.edu
arabidopsisdevatlas.salk.edu
Travis Lee@tralee-sci.bsky.social · last yr.Thrilled to have our spatial single-cell atlas of the Arabidopsis lifecycle in @NaturePlants. Turns out that its easy to make nice images when spatial expression of 1,000 genes is available! 1/n @natanellae.bsky.social @tatsuyanobori.bsky.social @joeecker.bsky.social www.nature.com/articles/s41...
Very excited to share some of the latest work from the lab, a great collaboration with Joe Ecker and Jingtian Zhou @zhoujt.bsky.social, our efforts to create the first single cell body map of 3D genome organization and DNA methylation across human tissues.
@zhoujt.bsky.social · 2y ago1/10 Excited to share our latest - the first whole-body map of both DNA methylation and 3D genome at single-cell resolution.
