ActinoBase

@actinobase.bsky.social

Streptomyces biology and natural products. Visit the wiki at: http://actinobase.org for help and protocols. Visit http://streptomyces.org.uk for genomes, strains and plasmids. Email matt.hutchings [at] jic.ac.uk to get involved. #microsky

Really pleased to finally see this out! More insights into the global regulator MtrA and how it helps S. ven sense and respond to its environment.

Matt Hutchings@matthutchings.bsky.social · 3mo ago

Great to see this published in the @microbiologysociety.org collection on Actinomycetes Conserved regulator MtrA directly activates ectoine biosynthesis and expression of BldM and WhiI to trigger sporulation in response to hyperosmotic stress www.microbiologyresearch.org/content/jour... 1/2

Excited to announce our new paper in Nature Microbiology describing diphtheria toxin homologues in Streptomyces called Streptomyces antiquus insecticidal proteins (SAIP), stemming from a long term collaboration with Ying Xu, Min Dong, Cameron Currie, and many others. www.nature.com/articles/s41...

Streptomyces produce a diphtheria toxin-like exotoxin that targets insects - Nature Microbiology

Bioinformatic, structural and functional analyses characterize Streptomyces antiquus insecticidal protein (SAIP) as a diphtheria toxin homologue that is lethal to insect cells and targets the Flower p...

nature.com

New paper with @barriewilks.bsky.social. There are many reports on fasamycins and formicamycins (aka accramycins, naphthacemycins, streptovertimycins). Here, we unambiguously solve their structures and stereochemistry. A great effort, led by Dr Edward Hems pubs.acs.org/doi/10.1021/...

Using X-ray Crystallography and 1,n-ADEQUATE NMR to Revise the Structures of Highly Substituted Aromatic Natural Products: The Absolute Configuration of Formicamycin Congeners

Formicamycins and their biosynthetic precursors, the fasamycins, form part of the phenylnaphthacenoid family of polyketide natural products. A recent atroposelective total synthesis of formicamycin H brought into question our original stereochemical assignment of the axially chiral linkage between C-6 and C-7. To address this, we obtained an X-ray crystal structure for formicamycin H that unambiguously confirmed our original assignment as the Sa atropisomer. X-ray structures for multiple additional fasamycins and formicamycins confirmed that this is common to all congeners. However, these studies identified a compounded error made by us whereby several structures previously reported as para-methoxy were found to have ortho-methoxy groups on the hanging E-ring. To address this for congeners that did not crystallize or gave nondiffracting crystals, we turned to the surprisingly underutilized 1,n-ADEQUATE NMR experiment. In total, we generated X-ray structures for 15 phenylnaphthacenoid metabolites and by combining these results report the corrected structures for three formicamycins, six fasamycins, and three biosynthetic lactone intermediates, noting that several revised fasamycin structures now match previously reported naphthacemycins. Our results highlight the utility of 1,n-ADEQUATE experiments for regiochemical determination in polysubstituted aromatic molecules. Moreover, our investigations uncovered a potential deracemization step during biosynthesis of the formicamycin framework.

pubs.acs.org

We first developed ALBERT-DF, a model trained on genomic context, hypothesizing it would recognize defense islands or MGE. We validated its predictions in Streptomyces Albus, uncovering six novel antiphage systems, including only proteins with completely novel domains.

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How. My. Science. It's official. We are heading back to Latitude Festival and are excited to be branching out into the forest of science and culture!! 🥳🥳🥳

Latitude Festival@latitudefestival.bsky.social · 5mo ago

Are you ready to venture into the cosmos? 🪐 The @cosmicshambles.com Forest of Science and Culture is back - bigger, bolder, and more fascinating than before. Expect the unexpected. There will almost certainly be surprises. Head here to explore your full Shambles line up 🔎 tinyurl.com/5n6fw86m

The MIBiG 5.0 Annotathon is coming soon, and registration is now open! 🧬 Does your research involve biosynthetic gene clusters? Do you love natural product biosynthesis? Do you have an interest in rare & exotic enzymes? We can use your help & expertise. Register here 👉 forms.gle/C1cWcLHtrjT2...

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