🎉 Finally out!! Our paper, "DynaPIN: A tool for characterizing dynamic protein interfaces" is accepted in JMB! @ezgikaraca.bsky.social (in collaboration with @sacquin-mo.eurosky.social & co.) DynaPIN is an open-source pipeline for analyzing dynamic protein interfaces. 🧵👇 📄 doi.org/10.1016/j.jm...

Our rescheduled webinar "DynaPIN: a tool for characterising dynamic protein interfaces" is happening tomorrow! 🗓️ 28 April 2026, 15:00 CET ✍️ bioexcel.eu/lgmq @ezgikaraca.bsky.social #webinar #ComputerSimulation #protein #molecularmodeling

Webinar: DynaPIN: A Tool for Characterizing Dynamic Protein Interfaces (2026-04-28)

Date: 28 April 2026 Time: 15:00 CET Registration Abstract Static structural models often fail to capture the dynamic mechanisms of protein interactions. To address this, we introduce DynaPIN, an open...

bioexcel.eu

Only a couple of days left to introduce our brand new tool, DynaPIN that @aysebercinb.bsky.social developed (in collaboration with @sacquin-mo.bsky.social & co.) to analyze dynamic/ensemble protein interfaces!

BioExcel CoE@bioexcelcoe.bsky.social · 4mo ago

🎗️ reminder that our #webinar on characterising dynamic #protein interfaces with the DynaPIN #software will take place next week; 🗓️ 31 March 2026, 15:00 CET ✍️ bioexcel.eu/lgmq @ezgikaraca.bsky.social #webinar #ComputerSimulation #protein #molecularmodeling

🚀 Excited to announce that our perspective piece with @ezgikaraca.bsky.social and @aysebercinb.bsky.social on AlphaFold distograms is now published in @febsletters.bsky.social!! Here is what we did further 👇

Büşra Savaş@busrasavas.bsky.social · last yr.

🚨 Super excited for our new preprint on flexibility cues in AlphaFold! Together with @ezgikaraca.bsky.social and @aysebercinb.bsky.social, we found that distograms of AF2.3 and AF3 mirror MD sampling by predicting the extent of a novel conformational change! 🤯 For more👇

364 days a year we use AlphaFold to predict protein structure… But not on Christmas Eve! That’s when Santa does the predictions. But beware, computational structural biologists on the naughty list will only get low pLDDTs #SantaFold #bananapro

And the legacy continues! 😊 @amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social #EMBOIntegMod25 ! 🍀🧿

Ezgi Karaca@ezgikaraca.bsky.social · 2y ago

The legendary EMBO Integrative Modeling Course is back! If you want to be in this picture in the 2025 edition, just go ahead and register at meetings.embo.org/event/25-bio... Organized by myself & @amjjbonvin.bsky.social & @arneelof.bsky.social & @lindorfflarsen.bsky.social

🚀 Excited to share that our article with @ezgikaraca.bsky.social is now published in Communications Biology! In this study, we explored DNA readout rules of almost identical DNMT3A and DNMT3B (91% sequence similarity!), and we asked: how can nearly the same proteins “see” DNA so differently? 🧬✨

Communications Biology@commsbio.nature.com · 12mo ago

Comparative dynamics analysis identifies key residues driving sequence specificity differences between human DNA methyltransferases DNMT3A and DNMT3B. @aysebercinb.bsky.social‬ @ezgikaraca.bsky.social‬ www.nature.com/articles/s42...