Beatriz Urda

@beatrizurda.bsky.social

PhDing at Barcelona Supercomputing Center | Exploring disease co-occurrences through omics, bioinformatics & HPC — with an eye on AI bias, and occasionally covered in clay.

⭕ El BSC explora las conexiones entre enfermedades como el #cáncerdemama y busca distinguir qué parte de estas relaciones se explica por la #genética o por 𝗳𝗮𝗰𝘁𝗼𝗿𝗲𝘀 𝗮𝗺𝗯𝗶𝗲𝗻𝘁𝗮𝗹𝗲𝘀 o modificables. 🔘Casi la mitad de estas conexiones tiene un origen que 𝘃𝗮➕𝗮𝗹𝗹á 𝗱𝗲𝗹 𝗔𝗗𝗡 y son potencialmente modificables.

Some diseases show up together. Others rarely appear in the same person This study looked into whether gene activity (from RNA data) can help explain why The answer: yes - more than we thought Relevant as we are testing RNA in LC & ME/CFS patients @amaticahealth Breakdown:

Bild

Totally! In our case it wasn’t even about sample size, but a basic textbook statistical concept 🤖. We even increased the sample size to show the results still held under the reviewer’s definition—and still, they wouldn’t budge.

She explains part of the fight over 2 years with an absurd referee (can happen) and an incompetent profesional editor unable to understand even basic statistics - or worse unable to take a decision by him/her self. But never mind: Beatriz won and the paper is now published in a better journal.

Beatriz Urda@beatrizurda.bsky.social · 11mo ago

1/ Everything that could go wrong in paper publishing… did. A story of patience, absurdity, and persistence 🌀 <1min From Alfonso Valencia’s lab and a very stubborn PhD student (me).

Very happy to get it out. For scientific & personal reasons this one is special. Beatriz has done more work and endured the most difficult - and absurd - publications battles I can remember. Thanks to PNAS for being "normal" and congratulations to Beatriz. (Beatriz: next one will be easier!)

Beatriz Urda@beatrizurda.bsky.social · 11mo ago

🚨 New in PNAS! 🧬 64% of disease co-occurrences can be explained by transcriptomic similarities. Comorbidities aren’t random—they have a molecular basis. Here’s how we found it 👇 (1/n) 🔗 doi.org/10.1073/pnas.2421060122 @alfonsovalencia.bsky.social

1/ Everything that could go wrong in paper publishing… did. A story of patience, absurdity, and persistence 🌀 <1min From Alfonso Valencia’s lab and a very stubborn PhD student (me).

Bild

👏🏆 Congrats to our #NetBio2025 prize winners: - Best Talk: Beatriz Urda-García - Best Poster Method: Arne Wehling - Best Poster Application: Sebastian Urquiza-Zurich - Best Poster Tool: Estefania Torrejon Thanks to all the (poster) presenters!!! It's amazing to have you in our community!!

Bild

🌐BSC is a proud partner of EU CIP project, that aims to create a #CancerInfoPortal to improve health literacy, empower patients, and reduce inequalities in access to cancer care information across Europe.

EU-CiP: The EU Cancer Information Portal Project@cancerinfoportal.bsky.social · last yr.

👋 Hello 🏡 We are the #EU-CIP project. We are building the #CancerInfoPortal - home for reliable and easy to understand information cancer patients and their families and carers in Europe. 🤝 We just kicked-off the project with partners from 18 European countries. Let's introduce you to EU-CiP. 1/7

Introducing EU-CiP. The EU Cancer Information Portal project

🚬The molecular impact of cigarette smoking resembles aging across tissues ⭕This is the 1st comprehensive, multi-tissue analysis to show that smoking doesn’t just harm specific organs like the lungs 🫁 📄By BSC & Universidade do Porto researchers, published in Genome Medicine: bsc.es/Zt2

Bild

New research alert 📝❗❗❗ In our latest pre-print, 2nd of my PhD, we performed a Systematic Literature Review on the use of Deep Representational Learning (DRL), especially the Variational Autoencoder (VAE), in cancer progression research. This thread explains our main findings. (1 minute read)

The first year of school is when a maths gap between boys & girls emerges, according to a 4-year longitudinal assessment of language & mathematical performance of all French first and second graders (2,653,082 children!) We now know when to focus interventions 🧪 www.nature.com/articles/s41...

Rapid emergence of a maths gender gap in first grade - Nature

Boys and girls exhibit very similar maths scores upon school entry, but a gender gap in favour of boys becomes highly significant after 4 months of schooling, which increases with years of schooling,&...

nature.com

New Insights into Medulloblastoma! 🧠 I am very happy to announce the first paper in my Ph.D. thesis journey: Exploring the Boundaries of Medulloblastoma Subgroups with synthetic Data Generation -> www.biorxiv.org/content/10.1... Let’s dive in into our findings with this thread! 🧵⤵️

Exploring the Boundaries of Medulloblastoma Subgroups with Synthetic Data Generation

Medulloblastoma is a childhood brain tumor traditionally classified into four molecular subgroups. Recent evidence suggests that Groups 3 and 4 represent a biological continuum rather than distinct en...

biorxiv.org