Bornberglab

@bornberglab.bsky.social

Molecular evolution and bioinformatics at Uni Muenster, Germany. Protein evolution | domains | de novo genes | comparative evolutionary genomics http://bornberglab.org/

📢 New paper in @jmolev.bsky.social! We studied cockroach and termite genomes to understand how transcription factors shaped social evolution in Blattodea. 🪳 Check it out here: doi.org/10.1007/s002...

Transcription Factor Evolution Associated with Social Transitions in Blattodea - Journal of Molecular Evolution

The phenotypic diversity between castes in social species has been associated with increased regulation of gene expression. while the regulatory role of transcription factors (TFs) in the social transitions of Hymenoptera (bees, ants and wasps) is well studied, it remains poorly explored in Blattodea (cockroaches and termites). By analysing three cockroach and five termite genomes, we show that while Blattodea share some convergent regulatory signatures with Hymenoptera, their transition is mostly characterised by distinct regulatory changes. We identified convergent patterns such as TF families with more relaxed selection compared to intensified selection and lineage-specific gene family expansions in termites, which has also been reported in Hymenoptera. There are also key differences in Blattodea TF regulation in comparison with Hymenoptera with contractions in TF gene families and no compensatory changes in TF DNA binding motifs either in frequency or diversity in TF promoter regions. Furthermore, we show that an increase in social complexity associates with greater diversity in TF activating domains, one of the evolutionary and structural building blocks of TFs; meanwhile, DNA-binding domains, undergo very little change. This study highlights similarities in social transitions between Hymenoptera and Blattodea, with evidence of large changes in transcriptional regulation followed by lineage specific adaptations. Our results indicate that at least in the case of Blattodea, the transcriptional diversity linked to social complexity is not attributable to transcription factors alone, but is instead likely driven in combination with alternative mechanisms.

doi.org

How does parental care evolve? We searched for genomic "footprints" in weevils, comparing 13 genomes across species with different levels of care. Our findings suggest relaxed selection and changes in gene regulation both play a role. Out now in Genome Biology and Evolution! doi.org/10.1093/gbe/...

Genomic Insights into the Evolution of Parental Care in Weevils

Abstract. Parental care, a key step in the evolution of sociality, has evolved multiple times in insects, yet the molecular mechanisms underlying its emerg

doi.org

We were delighted to welcome Aoife McLysaght to Münster as this year’s speaker for our faculty’s annual Bernhard-Rensch Lecture. She gave a great talk on “Unlocking the Evolutionary Potential of Whole Genome Duplication.” Thank you for sharing your insights with us!

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Marie traveled to the beautiful Hamburg to attend this year’s Graduate Meeting of the Evolutionary Biology Section of the DZG. Many thanks to the organizers for putting together such a nice meeting, featuring great talks and networking opportunities! 🧬☀️

Diyar H. (He/Him)@diyarhamidi.bsky.social · 5mo ago

Dear all, The deadline has been extended to 27 February! We will host the 29th DZG Graduate Meeting in Evolutionary Biology! Don’t miss this great opportunity to share your research, exchange ideas, and connect with other researchers in evolutionary biology. Scan the QR for details👇

This year, our group traveled to Diever for our retreat. Alongside a series of great talks focused on selection, we enjoyed fun activities like an escape room 👽🧪 and axe throwing 🪓. We also made use of the sunny weather with hikes through the beautiful nature surrounding Diever. ☀️🌳

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New paper! 📢 The authors used droplet microfluidics to study aryl sulfatases and their ancestors. They show higher mutation rates gave a wider distribution of active variants but fewer improved variants overall and highlight the need to test diverse mutagenesis regimes. doi.org/10.1039/D5AN00865D

Studying the evolutionary potential of ancestral aryl sulfatases in the alkaline phosphatase family with droplet microfluidics

Characterizing the dynamics and functional shifts during protein evolution is essential, both for understanding protein evolution and for rationalizing efficient strategies for e.g. enzymes with desir...

doi.org

🚨 New paper in GBE! 🚨 This study analyzes two high-quality Cryptocercus genomes, the sister group to all termites, to investigate the transition to subsociality and wood-feeding (xylophagy) in Blattodea. 🪳 Check it out here: doi.org/10.1093/gbe/...

Cryptocercus genomes expand knowledge of adaptations to xylophagy and termite sociality

Abstract. Subsociality and wood-eating or xylophagy are understood as key drivers in the evolution of eusociality in Blattodea (cockroaches and termites),

doi.org

New review out in Nat Rev Genet: Emergence & evolution of protein-coding de novo genes by Erich and Lars Eicholt @lacholt.bsky.social. How non-coding DNA becomes translated, persists or is lost in populations, and can yield structured/functional proteins—plus methods & open questions! rdcu.be/e09SM

Emergence and evolution of protein-coding de novo genes

Nature Reviews Genetics - De novo gene evolution entails the birth of new genes from previously non-coding DNA. In this Review, Bornberg-Bauer and Eicholt overview how protein-coding de novo genes...

rdcu.be

🧬 What does the starting material from which genes could emerge #denovo look like? 🌱 We used #RiboSeq to investigate the landscape of translated de novo ORFs in 3 #Arabidopsis species, and how they might be linked to gene birth! 📝 Check out our preprint here: doi.org/10.1101/2025...

Pervasive translation of short open reading frames and de novo gene emergence in Arabidopsis

Ancestrally non-genic sequences are now widely recognized as potential reservoirs for the de novo emergence of new genes. Across clades, some de novo genes were proven to have substantial phenotypic effects, and to contribute to the emergence of novel biological functions. Yet, still very little is known about the starting material from which de novo genes emerge, especially in plants. To fill this gap, we generated Ribosome Profiling data from the closely related species Arabidopsis halleri, A. lyrata and A. thaliana and characterized genome-wide patterns of translation across them. Synteny analysis revealed 211 Open Reading Frames (ORFs) that have emerged de novo within the Arabidopsis genus and already exhibit signs of active translation. Most of these de novo translated ORFs were species- and even accession-specific, indicating their transient nature, with patterns of polymorphism consistent with neutral evolution in natural populations. They were also significantly shorter and less expressed than conserved Coding DNA Sequences (CDS), and their GC content increased with phylogenetic conservation. While most of them were located in intergenic regions and are thus newly discovered, 34 were previously annotated as CDS in at least one genome, and are promising putative genes. Our results demonstrate the abundance of translation events outside of conserved CDS, and their role as starting material for the emergence of novel genes in plants. ### Competing Interest Statement The authors have declared no competing interest. Université de Lille, https://ror.org/0546v5182

doi.org

📢🪳 New paper alert! Former group members Alina and Mark contributed to a new study just published in Nature Communications. The team generated 47 new high-quality genomes from termites and cockroaches, filling a major gap in available data. Check out the paper here: www.nature.com/articles/s41...

Unravelling the evolution of wood-feeding in termites with 47 high-resolution genome assemblies - Nature Communications

Termites, the largest lineage of non-hymenopteran social insects, are important decomposers of plant organic matter in the tropics. Here, the authors sequence the genomes of 45 termites and two cockro...

nature.com

Berndjan and Alina both successfully defended their PhDs this week. Berndjan worked on “Probing the evolvability of ancestral and extant sulfatases using fluorescence-activated droplet sorting (FADS)”. Alina looked at the “Genomic basis of sociality in order Blattodea”. Big congrats!🥳🎓🧫🪳

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Erich traveled to Berlin for the Schering Prize award ceremony, where he delivered the laudatio for Agnes Toth-Petroczy, this year’s recipient of the Schering Young Investigator Award. Warm congratulations to her! Photo credits: Schering Stiftung/Michael Setzpfandt

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🚀We’re excited to share our new paper in Bioinformatics! We introduce a user-friendly toolkit that implements our novel DeNoFo file-format for standardised annotation of de novo gene detection workflows — enabling reproducible methodology descriptions and easier dataset comparison across studies.

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🎉We are happy to announce that our wonderful GEvol SPP will be funded by @dfg.de for another 3 years. Included are 17 great projects all over Germany with amazing people. You want to be part of this fantastic community? Soon you can find new PhD/Post-Doc positions here & on our website. Stay tuned🎉

We are in Bluesky and we are happy to share our two last consortium publications: the DrosEU expanded DEST dataset and a Continent-wide study of phenotypic differentiation among European #Drosophila melanogaster populations (1/7)

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