Nate DeYonker

@de-lab.bsky.social

Associate Professor @ University of Memphis Department of Chemistry. My words and thoughts. Always looking for new team members! synth/music/cat enthusiast. The enshittification migration continues.

What I hope will become my most cited paper is finally published online at WIREs Computational Molecular Sciences!! From our "Software Focus" paper on RINRUS, check out how you can use our software to make reproducible and predictable QM-cluster models to study enzymes! doi.org/10.1002/wcms...

<fc>RINRUS</fc>: A Toolkit for the Construction of Reproducible and Reliable <fc>QM</fc>‐Cluster Models of Enzyme Active Sites

The Residue Interaction Network ResidUe Selector (RINRUS) software package automates and standardizes QM-cluster model construction with clear rules guaranteeing predictability and reproducibility. B...

doi.org

I took the day off to finish a song. Was lucky to do so before having to take the cat to the vet for the second day in a row. Was lucky to do so before reading the news

Sandwiched between perhaps the most fun and rewarding ACS conference I've ever attended and getting to see Orcutt/Shelley/Miller with some of my best ever friends is the news that Mango might have cancer and needs more tests

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learning so much about music from ripping through the archive of Andrew Weatherall radio shows and DJ sets, but I also want so badly to travel back in time to the mid 90's and tell him he is mispronouncing Drexciya as badly as the teenaged mid 90's me was mispronouncing Autechre

Sabbatical is revving up and I had an awesome week at USF with Lee. Got to see grad school-mate Joe Larkin and teach the Woodcock lab how to use RINRUS. Heading into a quiet spring break in memphis. Heck yes!

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Had a marvelous day yesterday visiting Texas Christian University and hanging out with Ben Janesko and the Dept. of Chemistry & Biochemistry. My seminar presentation on RINRUS was well received and I was impressed with how much collaborative research happens in their department.

Trapped in the echo chamber... my entire Facebook feed is political "strategists" I've never heard of who write pretentious pitchfork review-length narratives criticizing every breath taken by the Trump administration

This a word cloud from the titles of ~1100 terminated NSF grants. It is hard not to see these grant terminations as an attack on the training of the future United States scientific workforce.

A word cloud from the titles of ~1100 NSF grants that were terminated. The most frequent words are STEM, ADVANCE, Student, career, and engines.

Isn't it remarkable to head into middle age and consider that for more than 75% of my life, my country has been led by someone who was (or is) a confirmed or suspected sex pest

holy moly, my 100th peer reviewed publication!!! We look at fundamental gas phase organometallic bonding with CCSD(T) and MRCI, get super accurate ionization energies of the 3d MCCH series, and find several challenging cases for electronic structure theory. pubs.acs.org/doi/full/10....

Theoretical Electronic Spectroscopy of Gas Phase Transition Metal Acetylide Cations (MCCH+, M = Sc···Zn)

C2H radicals and CnH polyynes are among the most abundant interstellar polyatomic molecules, predominantly observed in molecular clouds and planetary nebulae. While the C2H– anion is considered a plausible component in the interstellar medium (ISM), it has not yet been detected. Given the extensive study of interstellar polyynes, MCCH/MCCH+ species are also expected to exist in the ISM. Via fundamental metal–carbon bonding, MCCH/MCCH+ molecules exhibit strong polarity, enhancing the intensity of their rotational transitions and improving the chances of astronomical observation. Theoretical spectroscopy enables the generation of molecular reference data to aid in detections. In this study, highly accurate single reference coupled cluster theory [CCSD(T)] is compared to multireference configuration interaction theory (MRCISD+Q) to survey the electronic structure of 3d metal mono acetylide cations (MCCH+, where M = Sc to Zn) which could catalyze gas phase reactions in cold astrochemical environments. CCSD(T) and MRCISD+Q theories gave equivalent predictions of ground electronic states for all cations excluding CoCCH+. The MRCISD+Q ground state for CoCCH+ (4Φ) is multireference and multiconfigurational, and single reference coupled cluster energies could not be converged. The investigated electronic states of MCCH+ arise from interactions between the 1Σ+ ground state of the C2H– anion and the metal dication (M2+). A thorough analysis of multireference character of electronic states is reported. The 3Π excited state of NiCCH+ was the variationally accessible electronic state with the strongest reported multireference character (T1 diagnostic = 0.15, D1 diagnostic = 0.55, C02 = 0.26). Harmonic vibrational frequencies, infrared intensities, and dipole moments are computed for the identified ground states. Theoretical characterization of the ground and excited electronic states of these specific ions will assist in their astronomical detection, constrain laser spectroscopy experiments of the neutral species, and guide characterization in synthetic laboratories.

pubs.acs.org

About to embark on sabbatical next month, but conservatively planned due to family and funding constraints. I feel like I've already squandered the time and it hasn't even started yet. Anyone have tips on how to make the most of life?

AI should be used to make strong skills stronger, but we are training multiple generations of K-12+college+grad school that they should use AI to make their weak or non-existent skills strong... what could possibly go wrong?

One of the saddest part about going through Andrew Weatherall's DJ/radio set archive in reverse chronological order is that I have hit the late 90's, there are few full track listings, and suddenly Shazam can't ID any of the best tracks.

Isn't academia great? Yesterday I got my 100th paper accepted, nearly finished a grant proposal, started SERMACS mass emails, finished grading for the semester. Today I'm panicking about a collaborator who can't submit paperwork on time, and one of my grad students quit.