Anthony Snead

@anthonysnead.bsky.social

Population genomics | Environmental DNA | Bayesian Stats Post-Doc @NYU pronouns: he/him/his anthony-snead.com/ Views are my own

Genomics hivemind: I want to genotype a bunch of diverse, heterozygous diploids with a messy genome (🌽 -- who'd have guessed?) but I care about phase. Computational phasing doesn't really cut it, so wondering what the cheapest alternatives are -- nanopore to 10-20X? Linked shortreads?

Have you ever thought about the perks of doing fieldwork in your own backyard? ...Are you "urban-ecology-curious"? Come to our workshop at #SICB2025 on Jan 4 10:30-12:00 to learn about urban field safety, accessibility, engaging undergrads, designing experiments, permit perils, and more!

As the 🦈paper was well received, are you interested in a similar work on bony fishes? We looked at sexual systems (gonochorism, protogyny, protandry, bidirectional sex change & simultaneous hermaphroditism) in 4614 species! Ask me if you have questions! #evolution 🦑🐟 www.nature.com/articles/s41...

Phylogenetic tree with sexual systems for 4614 fish species: 4320 gonochoristic; 196 protogynic, 36 protandric, 16 bidirectional sex changers and 46 simultaneous hermaphroditic
Chiara Benvenuto@cbenvenuto.bsky.social · 3y ago

Evolution of reproductive modes in sharks and rays 🦈🦈🦈This is the paper I was hoping to write! Congrats to the authors, what an amazing work!!!! 🐟🦑#evolution onlinelibrary.wiley.com/doi/epdf/10....

Figure 1 in the cited paper: Phylogenetic tree with reproductive modes in sharks, rays and chimaeras based on 100 stochastic character mapping simulations

I have been avoiding singularity and containers in general .... but holy shit, I have been missing out! I do not know if I can ever go back. It makes bioinformatics sooooo much more portable!