🧬 New research in Bioinformatics Advances: "BLITSFR: Scalable comparative genomics with self-contained interactive single file report"  Find it here: https://doi.org/10.1093/bioadv/vbag282

💬 Just published in Bioinformatics Advances: "RCSB PDB AI Help Desk: Retrieval-augmented generation for protein structure deposition support"  Read it here: https://doi.org/10.1093/bioadv/vbag289

🧬 New paper in Bioinformatics Advances: "DNA breathing and shape encode distinct mechanisms of transcription factor binding"  Explore the paper: https://doi.org/10.1093/bioadv/vbag287

🧫 New in Bioinformatics Advances: "FerroEnrich: An interactive web platform for liver-focused ferroptosis index scoring, enrichment, and ferroptosis–senescence cross-talk analysis"  Find it here: https://doi.org/10.1093/bioadv/vbag285

🧪 New in Bioinformatics Advances: "OOPSIE (OOPS Informatics Extension)"  Read it here: https://doi.org/10.1093/bioadv/vbag278

🏷️ New paper in Bioinformatics Advances: "Accelerating metadata annotation in collaborative research centers: A hybrid AI workflow for biomedical entities" Find it here: https://doi.org/10.1093/bioadv/vbag283

📊 Latest research in Bioinformatics Advances: "pycmplot: Fast, low-memory multi-track circular and linear Manhattan plotting in Python"  See it here: https://doi.org/10.1093/bioadv/vbag281 Authors include: @cesarforteslima.bsky.social

🌾 New study in Bioinformatics Advances: "Employing AlphaFold and TED to explore the structural impacts of stress-associated mutations in rice"  Read it here: https://doi.org/10.1093/bioadv/vbag275

🤖 New research in Bioinformatics Advances: "User-driven development and evaluation of an agentic framework for analysis of large pathway diagrams" Explore the paper: https://doi.org/10.1093/bioadv/vbag277 Authors include: @egonw.mastodon.social.ap.brid.gy

🎯 New study in Bioinformatics Advances: "TAPPR PCR assay design — Targeted, Automated, Primer and Probe Retrieval for scalable molecular assay design"  Explore the paper: https://doi.org/10.1093/bioadv/vbag274

🌡️ Just published in Bioinformatics Advances: "RBApy: Extending resource allocation modeling to eukaryotes in complex environments"  Find it here: https://doi.org/10.1093/bioadv/vbag276

🦠 Just published in Bioinformatics Advances: "Identification and characterization of bacterial repeat-in-toxin adhesins using long-read genome analysis"  Find it here: https://doi.org/10.1093/bioadv/vbag272  Authors include: @guo-lab.bsky.social

📐 New in Bioinformatics Advances: "pykarambola: Minkowski tensor morphometry of 3D structures"  Read it here: https://doi.org/10.1093/bioadv/vbag273 Authors include: @ishiharaksk.bsky.social

🧫 New paper in Bioinformatics Advances: "CDS-BART: A BART-based foundation model for mRNA sequence analysis"  Find it at https://doi.org/10.1093/bioadv/vbag259

🍄 New paper in Bioinformatics Advances: "CentroFinder: A multi-feature framework for de novo prediction of fungal regional centromeres"  Read it here: https://doi.org/10.1093/bioadv/vbag270

🔬 New research in Bioinformatics Advances: "Central Dogma Transformer II: An AI microscope for understanding cellular regulatory mechanisms"  Read it here: https://doi.org/10.1093/bioadv/vbag268

We lost a giant of our field this March and we are happy to be able to share this tribute: "Phil Bourne (1953–2026): From small molecules to big data—the journey of a multifaceted visionary".  Read the tribute here: https://doi.org/10.1093/bioadv/vbag239

🧬 New paper in Bioinformatics Advances: "Loopcity: An R package for the detection of chromatin loop communities from Hi-C data"  Read it here: https://doi.org/10.1093/bioadv/vbag269 Authors include: @jpflores.rbind.io

🦠 Just published in Bioinformatics Advances: "ClinIAN: Clinically  Informed Attention Network”  Access it here: https://doi.org/10.1093/bioadv/vbag254

🗺️ New paper in Bioinformatics Advances: "ScGeo reveals non-canonical trajectories beyond RNA velocity in radiation-induced hematopoietic recovery"  Read it here: https://doi.org/10.1093/bioadv/vbag266

🔬 New research in Bioinformatics Advances: "A little longer, a lot better: Simulation-guided exploration of extended-length single-end barcoded reads for structural variant detection"  Read it here: https://doi.org/10.1093/bioadv/vbag267

🧬 New paper in Bioinformatics Advances: "MosaicLev: Modified Levenshtein distance for mobile element-aware genome comparison"  Read it here: https://doi.org/10.1093/bioadv/vbag261

🧬 New study in Bioinformatics Advances: "Theoretical estimates on the expected number of mutations needed to reconstruct clonal lineage trees"  Find it at https://doi.org/10.1093/bioadv/vbag264

☁️ New paper in Bioinformatics Advances: "Fedflow: Cloud orchestration for federated learning with the FeatureCloud platform"  See it here: https://doi.org/10.1093/bioadv/vbag255 Authors include: @janbaumbach

🔬 Latest research in Bioinformatics Advances: "SHISMA: SHape-driven Inference of significant celltype-specific Subnetworks from tiMe series single-cell trAnscriptomics"  Read it here: https://doi.org/10.1093/bioadv/vbag258

🧪 New paper in Bioinformatics Advances: "EnzymeSifter: A tool for discovery of industrial enzymes from metagenomes"  Available at: https://doi.org/10.1093/bioadv/vbag262  Authors include: @mattbashton.bsky.social

🦠 New study in Bioinformatics Advances: "MultiVirusConsensus: An accurate and efficient open-source pipeline for identification and consensus sequence generation of multiple viruses from mixed samples"  Read more: https://doi.org/10.1093/bioadv/vbag256 Authors include: @niema.net

🧬 New research in Bioinformatics Advances: "annoreport: An interactive tool for metagenome annotation"  Read it here: https://doi.org/10.1093/bioadv/vbag257

⏱️ Just published in Bioinformatics Advances: "MeTime: An R package for reproducible longitudinal metabolomics data analysis"  See it here: https://doi.org/10.1093/bioadv/vbag252

🧬 Recently published in Bioinformatics Advances: "Derivation of oligonucleotide barcodes that are absent from natural sequences"  Explore the paper: https://doi.org/10.1093/bioadv/vbag251