🧬 New paper in Bioinformatics Advances: "lncAPNet enables the deciphering of lncRNA–mRNA connections in patient transcriptomic data"  Find it here: https://doi.org/10.1093/bioadv/vbag204 Authors include: @fpsom.bsky.social

🔬 The latest research from Bioinformatics Advances: "Performance of deep learning methods for spatial gene expression prediction from histology images: a comprehensive assessment".  Read it here: https://doi.org/10.1093/bioadv/vbag202

🔬 New research in Bioinformatics Advances: "DAMFCMI: Capturing cross-view interactions via hybrid attention for circRNA–miRNA interaction prediction"  Access it here: https://doi.org/10.1093/bioadv/vbag109

🧬 New in Bioinformatics Advances: "CHITRA: An interactive visualization tool for comparative genomic rearrangement analysis"  Read it here: https://doi.org/10.1093/bioadv/vbag200 Authors include: @pranjalpruthi.bsky.social

🧰 New paper in Bioinformatics Advances: "EHItk: A toolkit for accessing Earth Hologenome Initiative data resources”  Available at: https://doi.org/10.1093/bioadv/vbag199

🧬 New in Bioinformatics Advances: "pLM-SAV: A Δ-embedding approach for predicting pathogenic single amino acid variants"  Read it here:https://doi.org/10.1093/bioadv/vbag195  Authors include: @hegedus.bsky.social

🧩 Latest research in Bioinformatics Advances: "Integrative multi-omics analysis identifies methylation-associated lncRNAs FAM83A-AS2 and AC012213.1 as candidate prognostic markers in lung adenocarcinoma"  See it here: https://doi.org/10.1093/bioadv/vbag096

🧬 New study in Bioinformatics Advances: "TPdsm: A method based on TabPFN for prediction of deleterious synonymous mutations"  Explore the paper: https://doi.org/10.1093/bioadv/vbag194

🔍 Just published in Bioinformatics Advances: "Enhancing feature selection for ordinal outcomes using resampling-based sparse linear discriminant analysis"  Find it here: https://doi.org/10.1093/bioadv/vbag196

🔬 New research in Bioinformatics Advances: "Optimizing bioinformatic workflows to extract clinically usable gene expression data from targeted tumor RNA sequencing panels: Comparison with total RNA-seq in cancer samples"  Access it here: https://doi.org/10.1093/bioadv/vbag197

🔒 New in Bioinformatics Advances: "NitroGene: Privacy-preserving collaborative genomic analysis using AWS Nitro Enclaves"  Read it here: https://doi.org/10.1093/bioadv/vbag191

🗺️ New paper in Bioinformatics Advances: "Fold or flop: quality assessment of AlphaFold predictions on whole proteomes"  Find it here: https://doi.org/10.1093/bioadv/vbag190 Authors include: @edosarti.bsky.social

🌿 New paper: "Exploring the molecular basis of Panax-notoginseng mediated inhibition of cervical cancer through machine learning, transcriptomics analysis, network pharmacology, molecular docking, and in-silico simulation approaches"  Read it here: https://doi.org/10.1093/bioadv/vbag164

✂️ New in Bioinformatics Advances: "CasPINS: an integrated web-based platform for CRISPR/TALEN gRNA design, primer generation, and indel decomposition analysis"  Find the full paper at: https://doi.org/10.1093/bioadv/vbag189

🔬 Latest research in Bioinformatics Advances: "scPD: a Python package for inferring continuous population dynamics from single-cell snapshot data" Read more: https://doi.org/10.1093/bioadv/vbag188

🧩 Recently published in Bioinformatics Advances: "Characterizing the fragmentation of AlphaFold predictions"  Explore the paper: https://doi.org/10.1093/bioadv/vbag186 Authors include: @edosarti.bsky.social

🔬 New paper in Bioinformatics Advances: "TelomereHunter2: Improved in silico telomere analysis software for precision oncology and single-cell studies"  See it here: https://doi.org/10.1093/bioadv/vbag187

🧬 New research in Bioinformatics Advances: "A latent factor framework to organize regulatory and metabolic programs inferred from scRNA-seq"  Access it here: https://doi.org/10.1093/bioadv/vbag185

⭕ Just published in Bioinformatics Advances: "nVenn2: faster, simpler generalized quasi-proportional Venn diagrams"  Find it here: https://doi.org/10.1093/bioadv/vbag183

📊 New in Bioinformatics Advances: "Effective visualisation of biomedical data using plot-misc"  Read it here: https://doi.org/10.1093/bioadv/vbag184

🔬 Just published in Bioinformatics Advances: "Generation of peptide detectability datasets from single DIA experiment for prediction model fine-tuning"  Read more: https://doi.org/10.1093/bioadv/vbag180

🦠 New research in Bioinformatics Advances: "Microbiome differential abundance methodologies to detect relevant taxa associated with chemotherapy toxicity rate in colorectal cancer"  Find it here: https://doi.org/10.1093/bioadv/vbag148

🗺️ Recently published in Bioinformatics Advances: "Region-aware bridge modeling enables interpretable mesoscale representation of spatial transcriptomic tissue sections"  Explore the paper: https://doi.org/10.1093/bioadv/vbag176

🧩 New study in Bioinformatics Advances: "BioGraphX: Bridging the sequence-structure gap via physicochemical graph encoding for interpretable subcellular localization prediction"  Access it here: https://doi.org/10.1093/bioadv/vbag181

🧬 New paper in Bioinformatics Advances: "CycleMix: Gaussian mixture modeling of the cell cycle"  Read more: https://doi.org/10.1093/bioadv/vbag179

🫀 New research in Bioinformatics Advances: "Identifying novel Japanese heart failure variants via endothelial cis-regulatory element analysis" Read more: https://doi.org/10.1093/bioadv/vbag178  Authors include: @rnakato.bsky.social

🗺️ New paper in Bioinformatics Advances: "pygenoscape: A Python package for spatial interpolation and visualization of genetic distance landscapes" Access it here: https://doi.org/10.1093/bioadv/vbag173 Authors include: @vermiformes.bsky.social

🧩 New study in Bioinformatics Advances: "MOREshiny: A user-friendly application for the inference of phenotype-specific multi-omic regulatory networks"  Explore the paper: https://doi.org/10.1093/bioadv/vbag175

🧫 Recently published in Bioinformatics Advances: "wavess 1.2: Presenting an HLA-aware within-host virus sequence simulation framework"  Read more: https://doi.org/10.1093/bioadv/vbag174

🔬 New paper in Bioinformatics Advances: "maldipickr dereplicates microbial MALDI-TOF spectra to facilitate multiplexed isolation"  Find it here: https://doi.org/10.1093/bioadv/vbag171 Authors include: @tclavel.bsky.social