Single-page, interactive overlap assembler for teaching purposes: lh3.github.io/teach-demo/o... (vibe coded)
Overlap Graph Assembly Demo
lh3.github.io
Trevor Mugoya
@trevormugoya.bsky.social
Bioinformatics Programmer in the Sethuraman Lab at SDSU.
Single-page, interactive overlap assembler for teaching purposes: lh3.github.io/teach-demo/o... (vibe coded)
Overlap Graph Assembly Demo
lh3.github.io
Heading to the International Polyploidy Conference in the Netherlands? Go check out my postdoc Dr. Tamsen Dunn's poster on our recent SLiM-based polyploid genome simulator, DemographiKs (github.com/tamsen/Demog...). www.pe-rc.nl/events/inter...
GitHub - tamsen/DemographiKS: population-level simulation to generate KS data
population-level simulation to generate KS data. Contribute to tamsen/DemographiKS development by creating an account on GitHub.
github.com
visited two Irish websites in the past two days that had this kind of pastejacking pop-up attempt. -do not- follow these steps under any circumstances
Avocados come in 2 varieties - A-types start each day female and switch to male midday. B-types do the reverse. In work just published from the last chapter of my PhD, we show this system evolved 40+million yrs ago and is regulated by alleles of 1 transcription factor www.pnas.org/doi/10.1073/...
Balanced polymorphism in a floral transcription factor underlies the ancient rhythm of daily sex alternation in avocado | PNAS
In avocado and certain wild relatives in Lauraceae, a highly synchronized daily rhythm of floral sex timing promotes cross-pollination between two ...
pnas.org
After a long week of engaging and fascinating talks and conversations it's good to take in the sights. The Monterey Bay Aquarium is a must see, incredibly gorgeous view of the ocean! #PEQG26
I made this Pride flag using only NASA images and our team thought it would be cool to share on social (I work on the NASA heliophysics communications team), but it's getting all sorts of hate on the bird app and Fbook. Thought y'all might be more appreciative of it here. ☺️🏳️🌈💖
Really saddened to hear about Prof. Edwards diagnosis 😥 I'm hoping he gets the care he needs during this difficult time.
Hi peeps - my friend, @sandiegostate.bsky.social colleague & kelp forest restorationist, Prof. Matthew Edwards was recently diagnosed with a rare form of brain cancer & his family is raising $ for his treatment and care. If you're able, please consider donating & sharing. Thanks! gofund.me/9551fd442
Congratulations to all awardees - especially to our lab's very own @trevormugoya.bsky.social! The next generation of genomics right there on one stage and pic! So proud of you, Trevor!
Congratulations to the 2026 AGBT General Meeting Next Gen Leadership Award Recipients. 🎉 AGBT is proud to recognize the outstanding early-career scientists and graduate students shaping the future of genomics and related fields. #AGBTGM2026 #AGBTNGLAwards
Presenting at #Botany2026 in Tucson? Apply for a BSA Travel Award! March 15 Deadline: Developing Nations, Professional, and Students & PostDocs Travel Awards April 1 Deadline: Sectional Student Travel Awards Applicants must be current BSA members. Learn more & apply: botany.org/home/awards....
Aaah! New preprint from the Sethuraman Lab has dropped! Tamsen and I have been working on this for a while, and we can’t wait for your feedback. Short thread on our swanky new polyploid genome simulator, DemographiKs, and its functionality.
Hidden in Plain Sight. How Ks histogram dynamics can reveal and obscure ancient whole genome duplications. https://www.biorxiv.org/content/10.1101/2025.11.19.689290v1
Hidden in Plain Sight. How Ks histogram dynamics can reveal and obscure ancient whole genome duplications. https://www.biorxiv.org/content/10.1101/2025.11.19.689290v1
Shout out to the #rstats {performance} package. Its check_model() function is super helpful for model evaluation. #statistics #STEM
Victoria Gray, the first individual to be cured of sickle cell disease with a CRISPR-based treatment, and Jennifer Doudna, #CRISPR pioneer, at the Liberty Science Center Genius Gala! 👑👑
When I randomly think to myself I'd rather have root canal surgery than go through another git rebase operation 😫
Also before I broke for Spring, I worked on theoretical expectations for biases in estimates of Fst, nucleotide diversity, and Tajima’s D due to gene flow from an unsampled ghost population; and updated our 4 year old preprint and submitted it. Fun! Comments welcome.