Materials Synthetic Biology Group

@matsynbio.bsky.social

Creative synthetic biology, engineered living materials, and optogenetics research group of Prof. Wilfried Weber. Account run by Lab members. Website: https://www.leibniz-inm.de/en/research/scientific-units/materials-synthetic-biology/

As an introductory post, check out our latest paper in which we engineer a phase-separated synthetic organelle that translates metabolic signals into gene transcription regulation! pubs.acs.org/doi/full/10....

Metabolite-Responsive Control of Transcription by Phase Separation-Based Synthetic Organelles

Living natural materials have remarkable sensing abilities that translate external cues into functional changes of the material. The reconstruction of such sensing materials in bottom-up synthetic biology provides the opportunity to develop synthetic materials with life-like sensing and adaptation ability. Key to such functions are material modules that translate specific input signals into a biomolecular response. Here, we engineer a synthetic organelle based on liquid–liquid phase separation that translates a metabolic signal into the regulation of gene transcription. To this aim, we engineer the pyruvate-dependent repressor PdhR to undergo liquid–liquid phase separation in vitro by fusion to intrinsically disordered regions. We demonstrate that the resulting coacervates bind DNA harboring PdhR-responsive operator sites in a pyruvate dose-dependent and reversible manner. We observed that the activity of transcription units on the DNA was strongly attenuated following recruitment to the coacervates. However, the addition of pyruvate resulted in a reversible and dose-dependent reconstitution of transcriptional activity. The coacervate-based synthetic organelles linking metabolic cues to transcriptional signals represent a materials approach to confer stimulus responsiveness to minimal bottom-up synthetic biological systems and open opportunities in materials for sensor applications.

pubs.acs.org