FALCON2: compression-based metagenomic classification of ancient viruses | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btag155/8561075?rss=1&login=true

FALCON2: compression-based metagenomic classification of ancient viruses

AbstractMotivation. Ancient DNA (aDNA) sequences present unique challenges for taxonomic classification due to extreme fragmentation (reads 20–100 bp), end

dx.doi.org

Need to identify viruses in ancient sequenced samples? You may want to try FALCON2 💻🦠🧬👨‍🔬👩‍🔬 doi.org/10.1093/bioi... github.com/cobilab/FALC... #bioinformatics #aDNA #viruses #metagenomics

New in GigaScience: “An evaluation of computational methods for reconstruction of human viral DNA genomes” 🎉 💻 🦠 Congratz! DOI: doi.org/10.1093/giga... #bioinformatics #virology

A decade ago, we had thousands of bacterial genomes. Now, we have millions. How to scale computational methods? Our paper in @naturemethods.bsky.social answers this: use evolutionary history to guide compression and search. rdcu.be/eg4OA w/ @baym.lol, @zaminiqbal.bsky.social et al. 🧵1/

Do you want to see a cool comparison of computational methods for reconstruction of human viral genomes? Check our latest preprint: doi.org/10.1101/2025... #Bioinformatics #Viruses

JARVIS3: an efficient encoder for genomic data doi.org/10.1093/bioi... #Bioinformatics #DataCompression

New from @dgpratas.bsky.social et al. for analyzing multiple sequences in multi-FASTA format using alignment-free methodologies. Scalable to millions of sequences for pandemic research and more AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data doi.org/10.1093/giga...

AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data

AbstractBackground. Most viral genome sequences generated during the latest pandemic have presented new challenges for computational analysis. Analyzing mi

doi.org

Intra-host genomic diversity and integration landscape of human tissue-resident DNA virome doi.org/10.1093/nar/...

Machine Learning-Driven Discovery and Database of Cyanobacteria Bioactive Compounds: A Resource for Therapeutics and Bioremediation pubs.acs.org/doi/10.1021/... #Bioremediation #Bioinformatics

AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data doi.org/10.1093/giga... #Bioinformatics #OpenScience