Stephen Turner
@stephenturner.us
Associate Professor and Research Dean at UVA School of Data Science, #Rstats enthusiast, dad, runner, guitar noise-maker. Views my own. Web: https://datascience.virginia.edu/people/stephen-turner Newsletter: https://blog.stephenturner.us
I made a little web tool for myself to drop in a PDF or paste in a link to a PDF and get back markdown. It's at stephenturner.github.io/pdfdown/ - maybe it's useful to you. Everything stays local in your browser. More info: blog.stephenturner.us/p/pdfdown-in...
pdfdown: in-browser PDF to markdown
...
blog.stephenturner.us
I wrote here about how tides have turned -- where last year I was fact-checking AI, I'm now using AI to fact check me. I just submitted a mini-review to arXiv that I'll share once it's posted, but in the meantime, here's the prompt I used for this blog.stephenturner.us/i/200128706/...
Roundup of what I've been reading, watching, writing this month blog.stephenturner.us/p/july-2026-...
July 2026 Links
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blog.stephenturner.us
Letters of collaboration should be limited to stating the intent to collaborate or provide material support as described in the application and should not contain endorsements or additional information about or evaluations of the proposed project. grants.nih.gov/grants/guide...
NOT-OD-26-094: NIH Is Replacing Letters of Support with Letters of Collaboration to Reduce Administrative Burden
NIH Funding Opportunities and Notices in the NIH Guide for Grants and Contracts: NIH Is Replacing Letters of Support with Letters of Collaboration to Reduce Administrative Burden NOT-OD-26-094. NIH
grants.nih.gov
"We request that the U.S. government support an international effort to develop the technical and governance tools needed to deliberately pace the frontier of automated AI development." www.pacingthefrontier.com
Pacing the Frontier
A statement from over 1000 employees of frontier AI companies
pacingthefrontier.com
While I think a 4-year PhD is attractive for both students and employers (I was in industry/biotech and can confirm), it's still an undeniable fact that a person who finishes a PhD in 4 years will know less and be less capable as a scientist than one who finishes in 5-6. www.nsf.gov/news/nsf-par...
NSF partners with universities and industry on pilot initiative for four-year Ph.D. programs with real-world research placements
The U.S. National Science Foundation announced a $47 million investment over five years, along with additional financial commitments from nearly three dozen universities and private industry...
nsf.gov
Or get a few hens in your backyard if you can. They’re great at turning leftover garden refuse, spent beer brewing grains, kitchen scraps, etc into protein.
It's a point I've been trying to make for a long time: there is no good way to meet even 10% of current demand for animal products. They trash the living world, whichever way you do it. If you want to reduce your impact, switch to a plant-based diet. www.theguardian.com/environment/...
A couple of years ago I was pitching a major poultry industry company on AI enabled precision genome editing. Two hours into the meeting I learned that “AI” to them obviously referred to Avian Influenza. Know your audience.
cnsplots: Publication-Ready Scientific Plots for Cell, Nature, and Science Journals github.com/faridrashidi... really cool work here from a postdoc at NIH.
GitHub - faridrashidi/cnsplots: 🎨 Toolkit for generating publication-quality plots for Cell, Nature and Science journals
🎨 Toolkit for generating publication-quality plots for Cell, Nature and Science journals - faridrashidi/cnsplots
github.com
Scientific computing in the age of agentic AI openai.com/index/scient... with some #bioinformatics and #Rstats examples 🧬💻🧪
ARPA-H FASTPASS Fast Assessment of Solutions, Therapeutics, Pharmaceuticals, and Supplies sam.gov/workspace/co...
On the ancestry and evolution of the extinct dire wolf www.cell.com/cell-genomic...
On the ancestry and evolution of the extinct dire wolf
Gedman, Morril-Pirovich, et al. reconstruct the most complete and high-coverage dire wolf genome to date from ancient DNA using iterative and pangenome approaches. The authors find evidence supporting...
cell.com
ARPA-H proposal internal deadline Friday. DARPA proposal internal deadline tomorrow morning. Hold my beer.
It's really hard for me to get behind the distillation outcry and open-weight scaremongering. Stop milking the cow I stole. Knives could be dangerous so only I'm allowed to make and sell them. Sheesh.
Screening for Function, not just Sequence: A proposed successor to IARPA's FunGCAT program doi.org/hccvjq #biosecurity
Screening for Function, not just Sequence
A proposed successor to IARPA's FunGCAT program
doi.org
Excited for our 2026-2027 seminar series lineup, including @touchyourbrain.bsky.social, @aliciaizquierdo.bsky.social, @bjmarlin.bsky.social, @meghasehgal.bsky.social @pegmccarthy.bsky.social, @stephenturner.us, @alisonbernstein.bsky.social, Meaghan Creed, and many others!
Get ready for the 2026-2027 UAB Neuroscience Seminar Series! Coordinated by @kacummings.bsky.social, this CNC-sponsored series brings external speakers to campus for weekly seminars at the cutting edge of neuroscience.
Toward generalizable and interpretable AI in regulatory genomics www.nature.com/articles/s41... rdcu.be/fwcdT 🧬💻🧪
Toward generalizable and interpretable AI in regulatory genomics - Nature Genetics
This Review surveys the current landscape of genomic artificial intelligence through the lens of sequence-to-function models, examining how architectural choices, training data, prediction tasks, mode...
nature.com
Evaluating large language models for rubric-based essay grading in an undergraduate biology course journals.asm.org/doi/10.1128/...
That’s all academia is, man. Just entering six digit codes faster than your colleagues down the hall until you get tenure. Impact factors and teaching evaluations were so 2009.
No joke: what fraction of everyone's screen time is spend just refreshing logins? It has to be more than 10%, right? What complete embarrassment for the tech industry. Entirely seriously, this should be enough to get everyone laughed out of the room.
A Unified Open OnDemand Dashboard for Accessible nf-core Pipelines on HPC dl.acm.org/doi/full/10....
A Unified Open OnDemand Dashboard for Accessible nf-core Pipelines on HPC | Proceedings of the Practice and Experience in Advanced Research Computing 2026: Resilient Roots + Empowered Communities
dl.acm.org
Request for Information: NIH Common Fund is Soliciting Ideas for NIH-wide Challenges and Opportunities grants.nih.gov/grants/guide...
Pro-tip for watching Youtube vids offline sans ads. Stick this in your .bashrc, then run `ytdl <youtube_link>` function ytdl { yt-dlp -S vcodec:h264,res,acodec:m4a $1; }