Andrew Davinack

@vermiformes.bsky.social

Associate Professor of Biology - Wheaton College Massachusetts Marine Parasitologist | Ailurophile | New Yorker | Horror-writer Davinack Lab: https://departments.wheatoncollege.edu/faculty/davinack-andrew/

Today, TETTRIX officially begins. 🌍 🌿 Building on the foundations of TETTRIs, TETTRIX will strengthen Europe’s taxonomic capacity by connecting knowledge, expertise, infrastructure, and communities to generate reliable, actionable biodiversity knowledge for science, policy and society. 🫱🏻‍🫲🏻

Excited to share that I’ll be taking a leave from Wheaton this December to join NTNU in Trondheim through #TETTRIX. Years ago, I pitched very similar work to NSF and it wasn’t funded. Now I get to do it anyway, just by a different path. Life is funny like that. #biodiversity #taxonomy

From TETTRIs to TETTRIX: a new chapter for European taxonomy - Consortium of European Taxonomic Facilities - CETAF

TETTRIX will bring together 17 partners from 10 countries to build a more integrated, skilled and policy-ready European taxonomic system.

cetaf.org

I have an honors student this fall exploring genetic variation in the terminal regions of #monkeypox viral genomes. We’ve been using AI to debug some of the scripting errors we encounter and some of our prompts were flagged by OpenAI. At least there are now guardrails on some of these platforms.

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Visited my hometown of NYC this weekend to see the parents. So much has changed yet so much has remained the same. I have a love/hate relationship with this place like all NYers. Is it still the greatest city in the world? Undoubtedly. Does it often get on my nerves? Always #empirestateofmind

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Two of our long time faculty members retired last year. The powers that be will likely not replace them but rather opt for teaching-track positions. That means we have two research labs now empty. Which means I’ve *inherited* a bunch of cabinets to store my overflow of #worm samples. 🪱

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My student and I were featured in a recent article by Wheaton College. Rylie helped develop our new python software package pygenoscape, which spatially interpolates genetic distances among individuals to visualize genetic differences across a landscape. #popgen #PUI #undergradresearch

Blazing new paths in scientific software

Professor Andrew Davinack and Rylie Seaberg ’26 created software that transforms genetic data into three-dimensional landscapes, allowing researchers to see how genetic variation changes across geogra...

wheatoncollege.edu

Yesterday while getting work done at my hotel lobby in Frankfurt I was approached by two police officers who started interrogating me about a stolen cellphone - I was patted down, ordered to unlock my phone and they started searching me. Don’t tell me - I know why… what an introduction to Germany!

With all the talk about #Cyclospora, this is a good time for some self-promotion. If you want to understand #parasites and how they tick (no pun intended) and why getting rid of them entirely is not necessarily a good idea, check out my new book coming out in the Fall - release date has moved up!

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My undergrad student and I just built a tool that visualizes gradients in genetic composition among individuals distributed across a landscape. New #popgen tool. Works for sanger sequence data or precomputed distance matrices generated from RAD-seq datasets. academic.oup.com/bioinformati...

pygenoscape: a Python package for spatial interpolation and visualization of genetic distance landscapes

AbstractMotivation. Spatial genetic structure is central to population genetics and phylogeography, but many approaches rely on discrete population models

academic.oup.com

About to submit yet ANOTHER NSF proposal focused on taxonomy. It's the same proposal I've submitted over the past few years, dressed up different to satisfy reviewers who think that more data (aka genomes) actually means more resolution for understudied taxa...when it actually doesn't.