nf-core
@nf-co.re
A community effort to collect a curated set of analysis pipelines built using Nextflow.
Pipeline release! nf-core/magmap v1.3.0 - nf-core/magmap v1.3.0! Please see the changelog: https://github.com/nf-core/magmap/releases/tag/1.3.0
Release nf-core/magmap v1.3.0 · nf-core/magmap
What's Changed Add proteins/magmap.proteins.faa.gz, a protein FASTA of all selected genomes Add Unassigned_NoFeatures/Unassigned_Ambiguity columns to overall_stats.tsv.gz, and run FeatureCounts on...
github.com
Pipeline release! nf-core/pixelator v5.0.3 - nf-core/pixelator 5.0.3! Please see the changelog: https://github.com/nf-core/pixelator/releases/tag/5.0.3
Release nf-core/pixelator 5.0.3 · nf-core/pixelator
[5.0.3] - 2026-10-07 Patches Enhancements & fixes Size PIXELATOR_DENOISE for 8k cell runs in the cells_8k profile. By @johandahlberg #258 Reject samplesheets where pool equals sample. By @Aratz #2...
github.com
Pipeline release! nf-core/metatdenovo v2.0.0 - Better support for mixed communities and mixed data types! Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/2.0.0
Release Better support for mixed communities and mixed data types · nf-core/metatdenovo
Better support for mixed communities and mixed data types. Several ORF callers, including MetaEuk for splice-aware calling in eukaryotes, can now run in one go, together with your own ORFs. Their c...
github.com
⏳8 days to go! Join us in Barcelona to collaborate on projects, discuss code & learn from eachother: hubs.la/Q04zpHK80 Today's spotlight ⬇️ ⚒️ Project → Clew: impact analysis over the lineage Nextflow already writes 🧑💻 Project Lead → Seema Jagadeesh, QuietFlare 🔗 Project Link → hubs.la/Q04zpHJV0
Pipeline release! nf-core/stableexpression v1.1.0 - nf-core/stableexpression v1.0.0 - Canis lupus! Please see the changelog: https://github.com/nf-core/stableexpression/releases/tag/1.1.0
Release nf-core/stableexpression v1.0.0 - Canis lupus · nf-core/stableexpression
Added #58 Tries to fetch genome annotation from the Ensembl organisms FTP, in addition to Ensembl and NCBI. Fixed #38 Fix bug with species having multiple entries in g:Profiler (like canis lupus...
github.com
Pipeline release! nf-core/datasync v1.0.2 - 1.0.2! Please see the changelog: https://github.com/nf-core/datasync/releases/tag/1.0.2
Release 1.0.2 · nf-core/datasync
What's Changed Version bump by @delfiterradas in #99 Update changelog by @delfiterradas in #101 Use latest DOI by @delfiterradas in #102 Patch release 1.0.2 by @delfiterradas in #100 Full Changel...
github.com
Not long to go! Join us for a week of @nextflow.io innovation: summit.nextflow.io
7 days to go until the #NextflowSummit by @seqera.io!🎉 💻 Oct 13-14 | Virtual Nextflow Summit - 50 talks, 8 tracks, @primamente.bsky.social keynote, and exclusive product launches: hubs.la/Q04zjFhf0
9 days until the Barcelona Hackathon! Today's project spotlight ⬇️ ⚒️ Project → nf-core/dartseq - Finalise for its first stable release 🧑💻 Project Lead → Olga Brovkina, Institute of Clinical Molecular Biology 🔗 Project Link → hubs.la/Q04zfNph0
Pipeline release! nf-core/datasync v1.0.1 - 1.0.1! Please see the changelog: https://github.com/nf-core/datasync/releases/tag/1.0.1
Release 1.0.1 · nf-core/datasync
What's Changed Pin nf-schema for AWS full test by @delfiterradas in #97 Patch release 1.0.1 by @delfiterradas in #98 Full Changelog: 1.0.0...1.0.1
github.com
The Barcelona Hackathon is happening next week!⏳ Choose from 16 hackathon projects or submit your own. Today's project spotlight ⬇️ ⚒️ Project → Static typing in nf-core 🧑💻 Project Lead → Nicolas Vannieuwkerke, UZ Gent 🔗 Project Link → hubs.la/Q04z6-2X0
Pipeline release! nf-core/datasync v1.0.0 - 1.0.0! Please see the changelog: https://github.com/nf-core/datasync/releases/tag/1.0.0
Release 1.0.0 · nf-core/datasync
v1.0.0 - 2026-09-28 Initial release of nf-core/datasync, created with the nf-core template. Added Samplesheet-driven copying of files and directories between local paths and rclone-supported objec...
github.com
Pipeline release! nf-core/mhcquant v3.3.0 - 3.3.0 - Favorite! Please see the changelog: https://github.com/nf-core/mhcquant/releases/tag/3.3.0
Release 3.3.0 - Favorite · nf-core/mhcquant
Added Added MultiQC plot for DeepLC retention time calibration per sample #461 Added MultiQC box plot of aligned residuals in the quant workflow #462 Added manifest.diagram to nextflow.config by @...
github.com
Pipeline release! nf-core/tumourevo v1.0.0 - nf-core/tumourevo version 1.0.0! Please see the changelog: https://github.com/nf-core/tumourevo/releases/tag/1.0.0
Release nf-core/tumourevo version 1.0.0 · nf-core/tumourevo
Initial release of nf-core/tumourevo a bioinformatics pipeline to model tumour evolution that can run the following tools: VEP CNAqc TINC VIBER MOBSTER PyClone-VI ctree SparseSignatures SigProfiler
github.com
13 days to go, and the projects keep coming!👩💻Choose from 16 hackathon projects or bring your own idea.💡 hubs.la/Q04z02gP0 #NextflowSummit Todays' hackathon project spotlight ⬇️
Pipeline release! nf-core/proteinfamilies v2.6.0 - Tungsten Raven! Please see the changelog: https://github.com/nf-core/proteinfamilies/releases/tag/2.6.0
Release Tungsten Raven · nf-core/proteinfamilies
Changed #192 Updated nf-core modules and subworkflows to latest. mgnifam 4.0.0 now also writes a <chunk>_mgnifam_stats.json run summary, saved with the existing --save_iterative_family_metadata, ...
github.com
2 weeks to go until the nf-core Hackathon in Barcelona. There's still time to get involved: hubs.la/Q04ySz520 #NextflowSummit Todays' hackathon project spotlight ⬇️ ⚒️ Project → Docs guides 🧑💻 Project Lead → @chrishakk.bsky.social, @seqera.io 🔗 Project Link → hubs.la/Q04ySzsW0
15 days to go until the Hackathon in Barcelona.⏳ Join us: hubs.la/Q04yHBpQ0 💡Choose from 1 of 14 hackathon projects or submit your own project idea! Today's project spotlight 🧵
Pipeline release! nf-core/hadge v1.0.0 - v1.0.0 - [2026-08-23]! Please see the changelog: https://github.com/nf-core/hadge/releases/tag/1.0.0
Release v1.0.0 - [2026-08-23] · nf-core/hadge
First stable release of nf-core/hadge, combining 11 hashing- and genotype-based deconvolution methods (vireo, demuxlet, freemuxlet, souporcell, htodemux, multiseq, bff, demuxem, gmm-demux, hasheddr...
github.com
⏳ 16 days to go! Join the Barcelona Hackathon at the #NextflowSummit: hubs.la/Q04yxZJW0 Today's project spotlight ⬇️ ⚒️ Project → nf-core/seqinspector improvements 🧑💻 Project Lead → Franziska Bonath, @kthlibrary.bsky.social 🔗 Project Link → hubs.la/Q04yxZPT0
⏳ 17 days until the Barcelona nf-core Hackathon! Join one of the existing projects, or bring your own! Today's project spotlight ⬇️ ⚒️ Project → nf-core/spatialaxe improvements 🧑💻 Project Lead → Florian Heyl, @cnag-eu.bsky.social 🔗 Project Link → hubs.la/Q04ypPWK0
📆 We've extended the deadline for the Barcelona Hackathon! Choose from 13 hackathon projects, or bring your own project idea.💡Today's project spotlight ⬇️ ⚒️ Project → AWS megatests overhaul 🧑💻 Project Lead → @rikehanssen.bsky.social, @seqera.io 🔗 Project Link → hubs.la/Q04yjbwG0
We have now have 13 projects for the Barcelona Hackathon.⛰️Check out today's project spotlight 👇 #NextflowSummit ⚒️ Project → nf-core/sarek improvements 🧑💻 Project Lead → @maxulysse.github.io, @scilifelab-ngi.bsky.social 🔗 Project Link → nf-co.re/hackathon-pr...
Pipeline release! nf-core/isoseq v3.0.1 - v3.0.1 - Mended Zooble! Please see the changelog: https://github.com/nf-core/isoseq/releases/tag/3.0.1
Release v3.0.1 - Mended Zooble · nf-core/isoseq
WarningThis 3.0.0 major release have breaking changes. Samplesheets and command lines written for v2.0.0 will not work unmodified. See the v3.0.0 changelog notes for details. Patch release fixing ...
github.com
Pipeline release! nf-core/rnaseq v3.27.0 - nf-core/rnaseq v3.27.0 - Vanadium Vulture! Please see the changelog: https://github.com/nf-core/rnaseq/releases/tag/3.27.0
Release nf-core/rnaseq v3.27.0 - Vanadium Vulture · nf-core/rnaseq
A big release with new user-facing options, several bug fixes for edge cases (Azure, NCBI GTFs, kallisto-only runs, UMI-deduplicated BAMs), and two nf-core template updates. New features Screen co...
github.com
Last chance to register for the Barcelona #NextflowSummit @nf-co.re #hackathon !! 🇪🇸 👩🏻💻 💫
Ted Lasso Coach Beard Shouts 'Let's Go!'
Alt: Ted Lasso Coach Beard Shouts 'Let's Go!'
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⏰ Last call: Registration for Nextflow Training or the @nf-co.re Hackathon in Barcelona closes tomorrow. 🌆 Plus, connect with the Nextflow creators (@seqera.io) at the Rooftop Social!🌆 Spots are limited. Register by end of day tomorrow: hubs.la/Q04y5Wz70
The Barcelona nf-core Hackathon is happening in 3 weeks!⏳ Choose from 13 projects to work on, or bring your own project idea. Today's project spotlight 👇 ⚒️ Project → Benchmarking (Special Interest Group) 🧑💻 Project Lead → Kübra Narci, @ghga.bsky.social 🔗 Project Link → nf-co.re/hackathon-pr...
Pipeline release! nf-core/phyloplace v2.3.0 - v2.3.0 - 2026-09-23! Please see the changelog: https://github.com/nf-core/phyloplace/releases/tag/2.3.0
Release v2.3.0 - 2026-09-23 · nf-core/phyloplace
Added #95 - Accept gzipped input files throughout the pipeline, for every samplesheet column and individual file parameter alike (#76) (by @erikrikarddaniel) Changed #95 - Check the file name ex...
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23 days to go until the Hackathon in Barcelona ⬇️ Check our today's project spotlight. ⚒️ Project → nf-core/mag improvements 🧑💻 Project Lead → Jonathan Rondeau-Leclaire, Université de Sherbrooke 🔗 Project Link → nf-co.re/hackathon-pr...