To build a great model, one needs to take on the hat of a user. With Maximilian Rokuss, Fabian Isensee, Hallee E. Wong, and Anwesa Choudhuri we discussed how they did this for interactive segmentation. The insights they shared are presented in this blog post: hrovatin.github.io/posts/intera...

Model interactions for interactive segmentation

Building models through a magnifying glass.

hrovatin.github.io

There is no reason to stay bound to one programming language. I discussed ways to ease R-Python interoperability with Luke Zappia, Philipp Angerer, Tomasz Kalinowski. Their tips and tricks are collected in this blog: hrovatin.github.io/posts/r_pyth... @lazappi.bsky.social @t-kalinowski.bsky.social

From R to Python with minimal baggage

Getting the best of both worlds.

hrovatin.github.io

To figure out what it takes to make flow matching models solve single-cell biology questions, I discussed with Alessandro Palma, Doron Haviv, and Lazar Atanackovic. The insights they shared are presented here: tinyurl.com/278s5m58 @dorontheviking.bsky.social @lazaratan.bsky.social

Matching flows to data

Models that fit like water in a vessel.

tinyurl.com

To bring to light data science topics that usually don’t make it into publications I started a blog on this topic: hrovatin.github.io By interviewing different researchers, I plan to find out what is going on in the community.

Excited to see that our effort to write down all our atlassing experience is finally published.

Lisa Sikkema@lisasikkema.bsky.social · 2y ago

1/7 Planning to build a single-cell atlas? Or wondering how atlases can be useful to your research? Read our guide on single-cell atlases www.nature.com/articles/s41... published in Nature Methods, by @lisasikkema.bsky.social, @khrovatin.bsky.social, Malte Luecken, @fabiantheis.bsky.social et al.