Holly Rucker

@hollyrucker.bsky.social

PhD candidate at UW-Madison // interested in astrobiology, geobiology, isotopes, and Precambrian Earth

New preprint! How do you engineer one of biology’s most complex enzymes without breaking it? We used evolution as a guide to map a protein interface in nitrogenase, screening >9,000 variants to reveal sequence-function rules for future nitrogen fixation engineering. www.biorxiv.org/content/10.6...

Evolution-guided engineering of an ancient nitrogenase interface enhances enzyme activity and stability

Nitrogenase is the only enzyme capable of biological nitrogen fixation and a major target for sustainable agricultural engineering, yet its functional and structural complexity has made it difficult t...

biorxiv.org

Just finished this book and absolutely loved it! A very insightful look into the complicated history of taxonomy. I wasn’t familiar with Georges-Louis Leclerc, Comte de Buffon before this book and I’m so glad I am now!

Bild

🚨New pub is live! It was really fun to write this with my friend @carolinamicro.bsky.social. If you're curious about how phylogenomics has shaped our understanding of early life and want guidance on how to do this kind of work yourself, then this review is for you. Enjoy! 🚀 doi.org/10.1093/jamb...

Tracing ancient life through the genomic record

Abstract. Since its origins, life has been profoundly interconnected with Earth’s history. The genomes that underpin the diversity of modern life forms hav

doi.org

Happy to share that a fantastic article about my latest research was just published on NASA’s website! Very grateful to have such a spotlight on my PhD research and recent Nature Communications paper.

Resurrecting Ancient Enzymes in NASA's Search for Life Beyond Earth - NASA Science

NASA-supported scientists have resurrected an enzyme first used by organisms on Earth 3.2-billion years ago and, in the process, have validated a chemical

science.nasa.gov

IsoCamp was one of the most rewarding experiences of my PhD thus far-I highly recommend it for anyone interested in stable isotopes!

IsoCamp at UNM@isocampunm.bsky.social · 7mo ago

We are now accepting applications for #IsoCamp2026! Join us in beautiful New Mexico June 15th-26th to learn about stable isotopes from expert instructors and get hands-on instrument training. The application deadline is February 28th. For more information, or to apply, go to isocamp.org. Pls share!

New preprint on ancient oceans! We challenge the idea of early Earth as major N2O source; reshaping views on climate & biosignatures. Led by S. Buessecker @annedekas.bsky.social lab! ➡️ Microbial N2O reduction in sulfidic waters: Implications for Proterozoic oceans www.biorxiv.org/content/10.1...

Microbial N2O reduction in sulfidic waters: Implications for Proterozoic oceans

Throughout Earth’s history, shifts in ocean redox influenced the bioavailability of trace metals, shaping the activity of microorganisms. In Proterozoic oceans, the precipitation of copper (Cu) with sulfide was hypothesized to limit the bioavailability of Cu. This limitation may have suppressed microbial reduction of nitrous oxide (N2O), due to the Cu dependency of nitrous oxide reductase (Nos). It is thought that without this critical microbial sink, Proterozoic oceans were a significant net source of N2O. Here, we revisit this paradigm in light of recently derived ∼20-fold lower estimates for sulfide in Proterozoic seawater and an empirical evaluation of the potential for microbial N2O reduction under sulfidic conditions. Leveraging publicly available environmental metatranscriptomes, we infer active N2O reduction from the detection of nosZ transcripts in multiple marine and lacustrine systems in which sulfide and Cu concentrations are analogous to those of the Proterozoic. In controlled culture experiments, we demonstrate that the purple non-sulfur bacterium Rhodopseudomonas palustris can reduce N2O at sulfide concentrations up to 100 µM, well above levels predicted for Proterozoic oceans. Based on trace metal speciation modeling, we suggest that Cu remains bioavailable under Proterozoic-like conditions as a dissolved CuHS complex. Using phylogenetics, we infer that early N2O reducers were probably anoxygenic phototrophs and performed N2O reduction as dark metabolism. Collectively, these observations suggest microbial N2O reduction occurs under euxinic conditions, implying that Proterozoic marine N2O emissions were substantially lower than previously proposed. Our conclusions inform our understanding of the microbial ecology in sulfidic waters, the early climate, and the search for extraterrestrial life. ### Competing Interest Statement The authors have declared no competing interest. National Aeronautics and Space Administration, https://ror.org/027ka1x80, 80NSSC17K0296

biorxiv.org