Dan O'Leary

@doleary47.bsky.social

I'm a professor of chemistry at Pomona College in Claremont, California. I teach general and organic chemistry, NMR spectroscopy, and computational chemistry. My research interests span these realms + the history of science + 3D printing pedagogies.

Excited to share this set of 40 multicolor 3D-printed molecular orbital models for second-semester organic chemistry classrooms, developed with students @pomonacollege.bsky.social. Article and 3D print files (no paywall): pubs.acs.org/doi/10.1021/.... #chemsky #compchemsky #3DP #3Dprint #3DModels

3D-Printed Multicolor Molecular Orbital Models for a Second-Semester Organic Chemistry Course

We have developed a set of multicolor 3D-printed molecular orbital models associated with topics taught in a second semester organic chemistry course at Pomona College. The set includes the following: (1) π molecular orbitals (MOs) in benzene; (2) water sp- and p-type lone pair orbitals; (3) valence bond and π-MO models of amide stability and reactivity; (4) formaldehyde (neutral, H+, and Li+ complexes) sp- and p-type lone pair and π/π* orbitals; (5) orbital interactions and the Bürgi–Dunitz angle in a cyanohydrin transition state; (6) acetaldehyde enolate π-MOs; (7) orbital interactions in an enolate alkylation transition state; (8) orbital interactions in a lithium enolate aldol transition state; (9) benzyne πHOMO and π*LUMO orbitals; (10) n−σ* orbital interaction in the water dimer intermolecular hydrogen bond; (11) peptide α-helix structure and n−σ* orbital interaction in an intramolecular i, i + 4 hydrogen bond; (12) anomeric effect (nO–σ*CO orbital interaction) in a carbohydrate model compound. The models provide insights regarding aspects of π molecular orbital theory, stability, reactivity, and mechanistic “arrow pushing”. A hobby-grade five-color 3D fused deposition modeling (FDM) printer is used to make the models, which are sized to provide compact take-home class handouts and kits for each student. The models are fabricated with orbital bisections and text annotations to enhance information content. Student perceptions of this set of 3D-printed molecular models and their use in the classroom are generally favorable. 3D Manufacturing Format (3MF) model files are available in the Supporting Information for this article.

pubs.acs.org

Fischer's discovery of the configuration of (+)-glucose, described differently in organic textbooks, remains for me a must tell story as the semester winds down. Symmetry tests are timeless. This animation illustrates the end group interchange for sorting glucose (3) and mannose (4). #chemsky 🧪🎉

Pleased to share this set of ~35 multicolor 3D-printed molecular orbital models for organic chemistry classrooms, developed with students @pomonacollege.bsky.social. Article and 3D print files (no paywall): pubs.acs.org/doi/10.1021/... #ChemSky #CompChemSky #3DP #3Dprint #3DModels 🧪

Multicolor 3D-Printed Molecular Orbital Models for a First-Semester Organic Chemistry Course

We have developed a set of multicolor 3D-printed structural and molecular orbital models for use in a first-semester organic chemistry course. These models provide visual and tactile insights regarding aspects of organic structure, reactivity, and mechanistic “arrow pushing”. The set includes: 1. orbital models of σ and π bonding in methane and ethylene, 2. σCH–σ*CH hyperconjugation in staggered and eclipsed ethane conformations, 3. LUMO accessibility in SN2 electrophiles and HOMO–LUMO orbital interactions in SN2 transition states, 4. E2 transition state structure and orbital interactions in β-hydrogen removal and π bond formation, 5. σCH–pC hyperconjugation in the ethyl cation, 6. transition state structure and σCH–pC orbital interactions in a carbocation 1,2-hydride shift, 7. late and early, respectively, Br• and Cl• H atom radical abstraction transition state structures and SOMO orbitals, 8. bromonium ion structure and LUMO orbital, 9. protonated epoxide ion and neutral epoxide structures and LUMO orbitals, 10. transition state structure and orbital interactions in a hydroboration reaction, 11. transition state structure and orbital interactions in the lithium aluminum hydride reduction of formaldehyde, and 12. π molecular orbitals in 1,3-butadiene. The prints are made with hobby-grade 5-color 3D fused deposition modeling (FDM) printers and sized to provide compact take-home class handouts for each student or projected in-class with a document camera. Models are fabricated with orbital or electron density surface bisections and text annotations to enhance information content. Student perceptions of this set of 3D-printed molecular models are generally favorable and have improved their understanding of course materials.

pubs.acs.org