Proud to announce that PANORAMA just came out in @plos.org Computational Biology🧬 Paper: journals.plos.org/ploscompbiol... Code: github.com/labgem/PANOR... Docs: panorama.readthedocs.io/latest/ #Bioinformatics #Pangenomics #ComparativeGenomics #Microbiology #OpenScience 🧵 Here's what it does 👇

LABGeM@genolabgem.bsky.social · 3w ago

🧬 We're thrilled that PANORAMA has been published! An open-source method to predict & compare biological systems across bacterial pangenomes. Built on PPanGGOLiN, it runs at #pangenome scale in minutes vs. hours for genome-by-genome tools. 📄 doi.org/10.1371/jour... @jpjarnoux.bsky.social

🧬 We're thrilled that PANORAMA has been published! An open-source method to predict & compare biological systems across bacterial pangenomes. Built on PPanGGOLiN, it runs at #pangenome scale in minutes vs. hours for genome-by-genome tools. 📄 doi.org/10.1371/jour... @jpjarnoux.bsky.social

Big year for LABGeM 🎉 Our lab members are presenting 7 posters this year at @jobim2026.bsky.social — proud to showcase the breadth of research happening in our group! @genoscopeumr.bsky.social @cea.fr

This looks absolutely great. For those of us interested in pangenomes, I am sure this will be a super place to get data and the interface is very clean (plotly). Congrats to the authors (I don't know if they are on bsky): pangbank.genoscope.cns.fr

Nearly ten years after starting my PhD, excited to share our study on the metabolic diversity of extraintestinal pathogenic E. coli. An exciting journey with @vallenet.bsky.social sky.social (@genolabgem.bsky.social) and Erick Denamur (@iame-umr1137.bsky.social). journals.asm.org/doi/10.1128/... 1/3

📢 Job opening — Bioinformatics Engineer Join the MicroScope platform (LABGeM, CEA/Genoscope) to develop tools and pipelines for microbial genomics. 📍 Evry, France | ⏳ Fixed-term contract 🔗 bit.ly/3Z5WSXc @ifb-elixir-fr.bsky.social

Ingénieur en bioinformatique pour le développement de la plateforme MicroScope - LABGeM

Localisé au CEA/Genoscope, un centre de recherche scientifique dédié à la génomique environnementale, le Laboratoire d’Analyses Bioinformatiques pour la Génomique et le Métabolisme (LABGeM, UMR8030, l...

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📢 Hiring: Bioinformatics Engineer position funded by the ANR PanGAIMiX, for the development of new methods in the PPanGGOLiN software suite. 💻 Build cool tools for #pangenomics 🔬 computer science × biology 📍 Evry, France | ⏳ Fixed-term contract 👉 Interested? Contact us 🔗 bit.ly/3NfSP8o

Engineer for the development of new methods in pangenomics - LABGeM

Prokaryotes —bacteria and archaea— are diverse, ubiquitous organisms with vast impacts on health, soil, and ocean ecosystems. Large-scale genome sequencing and pangenomics have revealed their molecula...

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🚀 New preprint out! We are happy to introduce PANORAMA, a new bioinformatics tool for comparative pangenomics, designed to predict and compare biological systems across prokaryotic pangenomes. It has been developed by @jpjarnoux.bsky.social 📄 Preprint: doi.org/10.64898/202...

Panorama: a robust pangenome-based method for predicting and comparing biological systems across species

Over the last decade, the expansion in the number of available genomes has profoundly transformed the study of genetic diversity, evolution, and ecological adaptation in prokaryotes. However, traditio...

doi.org

Our PhD student Clémence Lauden is presenting her poster on Metapangenomic analysis within the Thermococcales at #Pangenome25 conference in Valencia🧬🌐 If you’re attending , don’t miss the chance to stop by, ask questions, and chat about the project. See you there! 👋🎓 #pangenome #archaea

@tlemane.bsky.social presented PanGBank at #Pangenome25 conference in Valencia 🧬🌐 We’re thrilled to share this resource with the community and to see the growing interest in #pangenomics

We’ve just released a set of Google Colab tutorials to help you get started with PanGBank. 🧬💻 github.com/labgem/PanGB... Whether you're new to the resource or looking to dig deeper, these step-by-step notebooks make it easy to jump in. 🔗 Try them out and tell us what you think! #pangenomics

We’re excited to announce the launch of the beta version of PanGBank website! 🧬🌐 pangbank.genoscope.cns.fr PanGBank is a web-based platform for exploring, analyzing, and downloading pangenomes created with #PPanGGOLiN. 🔗 Dive in, test it out, and let us know what you think! #pangenome

@genolabgem.bsky.social was there with @j-main-guy.bsky.social and @tlemane.bsky.social presenting the PanGBank database and new developments in metapangenomics #pangenome #PPanGGOLiN

IFB/ELIXIR-Fr@ifb-elixir-fr.bsky.social · 9mo ago

🧬 🔎 Ce 17 novembre a eu lieu la journée du consortium ABRomics à l’Institut Pasteur. L’occasion de présenter aux différents représentants de nos parties prenantes l’avancement du projet et les développements en cours !

🚀 We’re looking for a Master’s student to join the PanGAIMiX project to develop workflows for pangenome graph functional annotation at large scale 💻 Build cool tools for big genomic data 🔬 computer science × biology 📍 Evry | 📅 january 2026 | ⏳ 6 months 👉 Interested? Contact us bit.ly/4mMLLfp

A new opportunity to join the team !

David Vallenet@vallenet.bsky.social · 11mo ago

Join @genoscopeumr.bsky.social @genolabgem.bsky.social team to explore plastic-degrading microbiomes using cutting-edge #bioinformatics & #metagenomics data 📍 Évry, France | 28-month #postdoc contract 🗓 Apply by Sept 30, 2025 labgem.genoscope.cns.fr/2025/09/02/p...

Come work with us !

IFB/ELIXIR-Fr@ifb-elixir-fr.bsky.social · last yr.

📢🚨Recrutement d’un·e Ingénieur-e en développement logiciel ! 📍 Évry (91) / 💼 CDI @cea.fr 🔎 www.linkedin.com/feed/update/... #Recrutement #Ingénieur #Dev #Bioinformatique #OffreEmploi #Data #Mudis

We're on the lookout for a talented Software Development Engineer to join our team permanently at CEA and work on the MicroScope platform! 🚀💻 If you're passionate about software development and ready for a new challenge, we'd love to hear from you. @genoscopeumr.bsky.social‬ @cea.fr ‪

Thrilled to announce the successful defense of the Habilitation à Diriger des Recherches (HDR) by Violette Da Cunha! 🎉📚 Congratulations on this well-deserved achievement! #AcademicLife #Archaea @genoscopeumr.bsky.social‬ @univparissaclay.bsky.social @univevry.bsky.social

Congratulations to @jpjarnoux.bsky.social who just achieved a major milestone by successfully defending his thesis! 🎓✨ Welcome to the world of doctors! #AcademicLife #ProudPI #pangenomics @genoscopeumr.bsky.social‬ @univparissaclay.bsky.social @cea.fr @univevry.bsky.social

We've been keeping a low profile for a while, but we've got lots of good news...

We're offering a fully funded PhD to work on new methods for microbial #pangenomics using #LLM in collaboration with @guigau.bsky.social and Christophe Ambroise. labgem.genoscope.cns.fr/2025/03/17/f... Apply before April 27th. @genoscopeumr.bsky.social @cea-paris-saclay.bsky.social

PPanGGOLiN is now available on Galaxy! usegalaxy.fr/root?tool_id... A huge thanks to Thomas Lacroix, Romane Libouban and @bebatut.bsky.social

MicroScope training in sunny Montpellier in Christmas mode