New release of our Awesome Genomic Skills list is out! Now featuring roda-mcp (AWS dataset discovery), Kiro's life-sci skills, ClawBio's new MCP mode, and a community-contributed plant-genomics MCP. PRs welcome! github.com/GoekeLab/awesome-genomic-skills

The complex life of RNA EMBO | EMBL Symposium is taking place 13 - 16 Oct 2026 in Heidelberg AND virtually! Register by 1 September for on-site attendance here: www.embl.org/about/info/c... #RNA #RNAbiology @events.embl.org @embo.org @embl.org

The 2nd Workshop of the Human RNome Project Consortium took place last week in sunny Toronto 🇨🇦 ☀️, and @clare-r.bsky.social from our team had the pleasure of attending and hearing about the fantastic work happening all over the globe on #RNA modifications.

Exciting news for the RNA research community! The Human RNome Project has been launched: a global effort to map all human RNAs and their chemical modifications. Proud to support it and contribute to the article in Genome Biology doi.org/10.1186/s130... #RNA #bioinformatics #RNAstructure #modomics

Unlocking the regulatory code of RNA: launching the Human RNome Project - Genome Biology

The human RNome, the complete set of RNA molecules in human cells, arises through complex processing and includes diverse molecular species. While research traditionally focuses on four canonical nucl...

genomebiology.biomedcentral.com

Congratulations to Dr @jonathangoeke.bsky.social on being awarded the National Research Foundation (NRF) Investigatorship 2026! Presented by NRF Singapore, the award supports outstanding scientists and researchers in pursuing groundbreaking, high-risk research. @goekelab.bsky.social

New in Bambu-Pipe: batch effect correction now integrated into clustering for long-read single-cell & spatial RNA-seq Integrate samples across ONT & PacBio, combine 10x 3'/5' chemistries, and get clusters that reflect biology, not technical artifacts. github.com/GoekeLab/bambu-pipe

The 2nd Singapore RNA Salon is just 2 days away! We'll have talks from Early Career Researchers, snacks for networking and a *shuttle bus* to help transport attendees from NUS & A*STAR to NTU! Make sure to register to secure your spot (and receive the bus details!): form.gov.sg/69c0965ce982...

Applications are open for the Singapore Open Research Awards 2026. The awards recognise researchers for open, transparent, and reusable research with meaningful impact. Nominate someone or apply here libguides.ntu.edu.sg/SGORawards2026

We'll be at the NIRBA RNA Science Conference 2026! 🧬 🗓️ 22–23 Oct 2026 | 📍 Singapore Our lab is part of @NIRBA_sg Cluster 2 — RNA modifications & host immunity. Looking forward to the science and the community! #RNAScience #NIRBA #SaveTheDate

We’ve updated our awesome-nanopore list! The list is a community-curated list of ONT software tools, please feel free to check it out & contribute: github.com/GoekeLab/awesome-nanopore #Nanopore #Bioinformatics #LongReadSequencing

GitHub - GoekeLab/awesome-nanopore: A curated list of awesome nanopore analysis tools.

A curated list of awesome nanopore analysis tools. - GoekeLab/awesome-nanopore

github.com

2 weeks until the 2nd Singapore RNA Salon! Abstracts for the talks are below ⬇️ The event is open to everyone, from undergrads to PIs, hope to see you there! Registration: form.gov.sg/69c0965ce982...

AI is changing how science (& genomics!) gets done. 🧬 Check out our new "awesome" repo - a curated list of skills, MCP servers & benchmarks for AI agents in bioinformatics. Open source & open for contributions! github.com/GoekeLab/awe...

GitHub - GoekeLab/awesome-genomic-skills: A curated list of awesome genomics and bioinformatics agentic skills, MCPs and benchmarks for Claude Code, Copilot, Codex, Cursor, Gemini CLI, etc

A curated list of awesome genomics and bioinformatics agentic skills, MCPs and benchmarks for Claude Code, Copilot, Codex, Cursor, Gemini CLI, etc - GoekeLab/awesome-genomic-skills

github.com

AI is changing how science (& genomics!) gets done. 🧬 Check out our new "awesome" repo - a curated list of skills, MCP servers & benchmarks for AI agents in bioinformatics. Open source & open for contributions! github.com/GoekeLab/awe...

GitHub - GoekeLab/awesome-genomic-skills: A curated list of awesome genomics and bioinformatics agentic skills, MCPs and benchmarks for Claude Code, Copilot, Codex, Cursor, Gemini CLI, etc

A curated list of awesome genomics and bioinformatics agentic skills, MCPs and benchmarks for Claude Code, Copilot, Codex, Cursor, Gemini CLI, etc - GoekeLab/awesome-genomic-skills

github.com

🙌 Excited to share Bambu and our findings on the new long-read cDNA kit from Oxford Nanopore Technologies — featured at London Calling 2026. Full story at the RNA 2026 Pre-Meeting Workshop, Montreal! 🇨🇦 @nanoporetech.com @rnasociety.bsky.social #RNA2026 #OxfordNanopore #Bambu

The new long read cDNA kit by @nanoporetech.com is a major upgrade (and improvement!), substantially increasing read length, with a strong impact on transcript discovery and quantification. We @goekelab.bsky.social have tested this in the beta release, more updates soon #nanoporeconf

🧬 Join us for the 2nd Singapore RNA Salon! 📅 June 18th, 4–6 PM📍 NTU 3 talks from ECRs covering mitochondrial dsRNA & inflammation, engineered CasRx RNA editing and long-read single-cell & spatial RNA-seq followed by snacks and networking, all are welcome! ⭐ Link & more info in comments

Registration: Singapore RNA Salon: 18th June 16:00 - 18:00, NTU, School of Biological Sciences

form.gov.sg

Great trip to Fukuoka with PacBio! 🚀 Sui Yue is on-site, presenting bambu and representing the lab. Hands-on feedback always welcome — let’s discuss!💡 🔗 GitHub: github.com/GoekeLab/bambu 🔗 GitHub: github.com/GoekeLab/bambu-pipe 📄 Preprint: doi.org/10.1101/2024.12.30.630828

We are thrilled to release Bambu-pipe 🧬 🚀 A Nextflow pipeline built for speed, scalability, and precision — unlocking isoform-level insights from long-read single-cell and spatial RNA-seq data💡 🔗 GitHub: github.com/GoekeLab/bambu-pipe 📄 Preprint: doi.org/10.1101/2024.12.30.630828

GitHub - GoekeLab/bambu-pipe: Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu

Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu - GoekeLab/bambu-pipe

github.com

🚀 1 Hackathon. 3 days! A ton of fun and brain-storming! Huge thanks to the team! 💻✨ Check out our GitHub page for the tools we developed: 🔗 github.com/GoekeLab And the lab website for the team: 🌐 jglab.org #ScienceSky #Hackathon #OpenSource #ResearchComputing🚀💻