Henryk Straube

@hstraube.bsky.social

Plant biochemist & molecular biologist | Marie Skłodowska-Curie postdoc fellow @KU_PLEN @GeuFloresLab |🏳️‍🌈

Excited to share our latest publication on genetic transformation in Nannochloropsis and Microchloropsis!🦠 We demonstrate a robust sulfadiazine-based selection system enabling efficient transformation with minimal background growth in these important algal model species. shorturl.at/BGdov

Sulfadiazine selection enables high‐efficiency transformation in <fi>Nannochloropsis</fi> and <fi>Microchloropsis</fi>

Genetic engineering in the marine eustigmatophytes Nannochloropsis and Microchloropsis is constrained by intrinsic antibiotic resistance and reduced marker efficacy at high salinity. We show that mit....

onlinelibrary.wiley.com

So excited to share our new study about nicotine-mediated tobacco root-microbiota interactions, spearheaded by Tomohisa! Nicotine is a neurotoxin for insects, but for Arthrobacter, it works as a nutritional source that provides a competitive advantage. doi.org/10.1186/s401...

Horizontal acquisition of nicotine catabolism gene cluster enhances Arthrobacter fitness within tobacco root microbiota - Microbiome

Background Plant roots are hotspots for interactions with soil microbes, where a characteristic bacterial community structure is formed. Plant specialized metabolites often play pivotal roles in this assembly process. However, the molecular basis underlying root microbiota responses to these bioactive compounds, and how such metabolic interactions shape the assembly of host-specific root microbiota, remain largely unknown. Nicotine is a toxic alkaloid predominantly produced by the genus Nicotiana, and the genus Arthrobacter is known as one of the nicotine-degrading bacteria in the tobacco root microbiota. In this study, we used the tobacco–Arthrobacter interaction system as a model and integrated comparative genomics and experimental genetic manipulation assays to uncover the role of bacterial catabolism capacity for host specialized metabolites in shaping host-specific root microbiota. Results Nicotine catabolism genes are uniquely found in the Arthrobacter strains derived from nicotine-containing environments, and this restricted gene distribution is driven by a plasmid-mediated horizontal gene transfer. To assess the ecological consequences of this genomic adaptation in Arthrobacter fitness in tobacco roots, we characterized the nicotine utilization ability of Arthrobacter and conducted adaptation assays under in planta conditions using genetically manipulated Arthrobacter strains and tobacco mutants impaired in nicotine catabolism and biosynthesis, respectively. Nicotine improves Arthrobacter colonization of tobacco roots through a catabolism-dependent mechanism. Bacterial community analysis using a synthetic community approach further demonstrated that this metabolic adaptation enhances Arthrobacter fitness within tobacco root microbiota. Conclusions Our findings illustrated that bacterial catabolic capacity toward host-derived plant specialized metabolites is key for successful root colonization. This metabolic adaptation is driven by plasmid-mediated horizontal gene transfer and ultimately shapes the structure of the root microbiota community. Video Abstract

doi.org

We're recruiting a fungal biologist to our friendly department at the Hebrew University of Jerusalem, Rehovot, Israel. For details contact our chair. Talented non-Israli applicants are welcome to apply. See below.

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Working with faba bean (Vicia faba)? We've published a rapid, reliable DNA extraction protocol that avoids the rapid blackening of tissues, a common headache during DNA isolation. Protocol: www.protocols.io/view/rapid-d... Feedback and experiences are welcome! #PlantSci #FabaBean #OpenScience

Rapid DNA extraction from faba bean (Vicia faba) tissues

Rapid DNA extraction from faba bean (Vicia faba) tissues. Efficient DNA isolation is essential for hig. Read full protocol, steps, and materials on protocols.io

protocols.io

🌾 🪴 🌾 Back in 2022, I came across a social media post looking for plant biologists interested in collecting wild populations of a barley relative for a collaborative study. It sounded like a great opportunity to step away from my usual biochemistry-focused bench work and get out into the field. 1/3

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