Tessera

Fluxes and imbalances in the modern global nitrogen cycle www.nature.com/articles/s43... #jcampubs 🌊

Fluxes and imbalances in the modern global nitrogen cycle - Nature Reviews Earth & Environment

Synthetic fertilizer use has perturbed the global nitrogen cycle by increasing reactive nitrogen inputs to terrestrial systems. This Review synthesizes estimates of global nitrogen pools and fluxes si...

nature.com

Large-scale benchmarking of prokaryotic annotation tools across thousands of species link.springer.com/article/10.1... #jcampubs

Differences in Siderophore Production During the Growth of Phytoplankton in Southern Ocean Incubation Experiments Under High‐ and Low‐Iron Conditions enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/... #jcampubs 🌊

Differences in Siderophore Production During the Growth of Phytoplankton in Southern Ocean Incubation Experiments Under High‐ and Low‐Iron Conditions

Experiments performed in the Southern Ocean under low- and high-iron conditions showed that the heterotrophic bacteria community produced distinct iron-binding compounds called siderophores, dependin....

enviromicro-journals.onlinelibrary.wiley.com

Unbiased and scalable reduction of diverse bacterial genomes www.biorxiv.org/content/10.6... #jcampubs

A dataset of surface seawater metagenomes and 194 microbial genomes from a western Pacific Ocean transect www.nature.com/articles/s41... #jcampubs 🌊

A dataset of surface seawater metagenomes and 194 microbial genomes from a western Pacific Ocean transect - Scientific Data

Scientific Data - A dataset of surface seawater metagenomes and 194 microbial genomes from a western Pacific Ocean transect

nature.com

PhysiCelldFBA: Linking single-cell genome-scale metabolism to spatially explicit multicellular dynamics www.biorxiv.org/content/10.6... #jcampubs

Mechanistic modeling of bacterial translation initiation across growth conditions www.biorxiv.org/content/10.6... #jcampubs

Spatial heterogeneity shapes microbial eco-evolutionary dynamics of soil carbon www.biorxiv.org/content/10.6... #jcampubs

Bacterial vitamin sharing emerges from a balance between release and uptake www.biorxiv.org/content/10.6... #jcampubs

Electron acceptor-dependent duality of nitrous oxide metabolism in Thiobacillus during sulfur autotrophic denitrification www.frontiersin.org/journals/mic... #jcampubs

Phylogeny-guided curation reveals widespread misannotation of Asgard archaeal 16S rRNA gene sequences in public databases academic.oup.com/ismecommun/a... #jcampubs

Environmental sensing capacity predicts bacterial ecological strategies and environmental preferences www.biorxiv.org/content/10.6... #jcampubs

Cameron Thrash @jcamthrash.bsky.social · 2d ago

A global genomic survey of prokaryotic carbon fixation reveals an oxygen-tolerant rTCA cycle in the surface ocean www.biorxiv.org/content/10.6... #jcampubs 🌊

Marine heatwaves reorganize phytoplankton bloom phenology in the Gulf of Alaska aslopubs.onlinelibrary.wiley.com/doi/10.1002/... #jcampubs 🌊

Cameron Thrash @jcamthrash.bsky.social · 2d ago

Phosphorus acquisition among planktonic microbial communities across a salinity gradient academic.oup.com/ismecommun/a... #jcampubs 🌊

Phosphorus acquisition among planktonic microbial communities across a salinity gradient

Abstract. The Baltic Sea, with its pronounced gradient in temperature, salinity and nutrient availability, provides a natural system to investigate microbi

academic.oup.com

Cameron Thrash @jcamthrash.bsky.social · 2d ago

DeepKOALA: a scalable deep learning framework for KEGG Orthology assignment academic.oup.com/bib/article/... #jcampubs

DeepKOALA: a scalable deep learning framework for KEGG Orthology assignment

Abstract. The KEGG Orthology (KO) system links DNA and protein sequences to biological functions and pathways, providing a curated, fundamental, and consis

academic.oup.com

Accurate detection of metagenomic strain-level associations using average nucleotide identity with StrainSpy www.biorxiv.org/content/10.6... #jcampubs

Pushing the limits of single-cell proteomics to investigate bacterial heterogeneity using bacSCP www.nature.com/articles/s41... #jcampubs

Pushing the limits of single-cell proteomics to investigate bacterial heterogeneity using bacSCP - Nature Communications

Single-cell proteomics (SCP) can be used to quantify protein expression variability at cellular resolution. Here, Leodolter et al. develop an SCP method to quantify proteins in individual bacterial ce...

nature.com

Grounding microbial conservation in ecological principles www.nature.com/articles/s41... #jcampubs

Grounding microbial conservation in ecological principles - Nature Microbiology

Nature Microbiology - Grounding microbial conservation in ecological principles

nature.com

Bacterial growth under confinement requires transcriptional adaptation to resist turgor pressure build-up www.nature.com/articles/s41... #jcampubs

Bacterial growth under confinement requires transcriptional adaptation to resist turgor pressure build-up - Nature Communications

Bacteria often grow in confined spaces within biofilms, host cells or infection sites. Here, Le Blanc et al. show that E. coli growth in confined spaces generates pressures of hundreds of kPa, and is ...

nature.com

Structural basis for catalytic and inhibitory divergence between archaeal and bacterial ammonia monooxygenases www.biorxiv.org/content/10.6... #jcampubs

The importance of interbacterial relationships in shaping cyanobacterial ecology www.cell.com/trends/micro... #jcampubs 🌊

The importance of interbacterial relationships in shaping cyanobacterial ecology

Cyanobacteria are a globally abundant bacterial phylum that make key contributions to primary production and nutrient cycling in aquatic ecosystems. However, some cyanobacteria also cause substantial ...

cell.com

The 100 Diatom Genomes Project journals.plos.org/plosbiology/... #jcampubs

The 100 Diatom Genomes Project

This Community Page presents the 100 Diatom Genomes Project, which aims to sequence the genomes and transcriptomes of 100 diatom species across major lineages, life forms and ecological strategies. Th...

journals.plos.org

Constructing microbiome co-occurrence networks with confidence: A conditional, nonparametric, inference-based approach www.biorxiv.org/content/10.6... #jcampubs

Patterns and Drivers of Diatom Diversity and Biogeography in the North Pacific www.biorxiv.org/content/10.6... #jcampubs 🌊

Evidence for endemism and local adaptation in Antarctic soil bacteria www.pnas.org/doi/abs/10.1... #jcampubs

Evidence for endemism and local adaptation in Antarctic soil bacteria | PNAS

Antarctic soils represent one of the most extreme environments for microbial life on Earth, yet they harbor heterogeneous and diverse microbial com...

pnas.org

Dynamic and distinct physiological responses by a soil bacterium promote survival along a desiccation continuum journals.asm.org/doi/full/10.... #jcampubs

RNA virus infection reshapes carbon and nitrogen partitioning in a marine diatom www.biorxiv.org/content/10.6... #jcampubs

MetaCAT enables reconstruction of high-quality microbial genomes and their association with host traits from metagenomic data www.nature.com/articles/s41... #jcampubs

MetaCAT enables reconstruction of high-quality microbial genomes and their association with host traits from metagenomic data - Nature Microbiology

MetaCAT is a computational framework to assess host–microbiome interaction via a combination of high-accuracy and efficient microbial genome reconstruction and metagenome-wide association studies with...

nature.com