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Jakob Trendel

@jtrend.bsky.social

Postdoc in Küster lab at Technical University of Munich (TUM), Germany. Protein-nucleic acid interactions & photo-Xlinking proteomics | RNA | mass spectrometry | RNA-interacting proteomes | DNA-interacting proteomes | nucleotide-crosslinked peptides

14 Posts193 Follower384 Folgt
Kusterlab@kusterlab.bsky.social · 4mo ago

🚨📢 New paper online 🚨📢 Four Xlinking flavors in living cells, up to 1000-fold faster. Highlights include Xlinking kinetics of the RNA-binding proteome and a new way to quantify cytosolic RNA interactions only minutes after ribotoxic stress. #RNASky #Chromatin #Proteomics doi.org/10.1093/nar/...

Rapid photo-crosslinking in living cells reveals protein–nucleic acid dynamics on a timescale of minutes

Abstract. The activation of chemical reactions in living cells using ultraviolet (UV) light enables the interrogation of biomolecules in their native envir

doi.org

Kusterlab@kusterlab.bsky.social · 12mo ago

New preprint: We isolate peptide–RNA photo-crosslinks with tunable RNA chains from living cells for mass spec. This maps over 4,700 crosslinking sites across 744 proteins and offers the first glimpse into the RNA sequences in crosslinks by MS. Read here: doi.org/10.1101/2025...

Peptide-RNA photo-crosslinks with tunable RNA chain map protein-RNA interfaces

Photo-crosslinking mass spectrometry enables the identification of protein-RNA interactions in living cells, pinpointing interaction interfaces at single-amino acid resolution. However, current isolat...

doi.org

Kusterlab@kusterlab.bsky.social · last yr.

New Preprint: High-intensity 365 nm irradiation accelerates photoreactions in living cells by up to 1000×. We show protein–drug 💊, –protein 💪, –DNA 🧬, –RNA 🧬 crosslinking within seconds, and analysis by #massspec for #proteomics, #chembio, #chromatin and #RNAbiology. www.biorxiv.org/content/10.1...

Enhanced photo-crosslinking in living cells with high-intensity longwave ultraviolet light

The activation of chemical reactions in living cells using ultraviolet (UV) light enables the interrogation of biomolecules in their native environment with photoreactive probes or crosslinking reagen...

biorxiv.org

Kusterlab@kusterlab.bsky.social · last yr.

🚨Our new paper is online🚨 We use zero-distance⚡photo-crosslinking⚡to reveal direct protein-DNA interactions in living cells, enabling quantitative analysis of the DNA-interacting proteome on a timescale of minutes. #DNA #Chromatin #Proteomics www.cell.com/cell/fulltex...

The human proteome with direct physical access to DNA

Zero-distance photo-crosslinking reveals direct protein-DNA interactions in living cells, enabling quantitative analysis of the DNA-interacting proteome on a timescale of minutes with single-amino-aci...

cell.com

Jakob Trendel@jtrend.bsky.social · last yr.

Excited our paper is out in Cell @cp-cell.bsky.social! 🧬⚡ DNA photo-crosslinking proteomics in living cells 🎯 Pinpoints protein-DNA interactions to single amino acids 🌎 Globally quantifies DNA binding for >1800 proteins at a timescale of minutes 🔗 www.cell.com/cell/fulltex... 🧵

The human proteome with direct physical access to DNA

Zero-distance photo-crosslinking reveals direct protein-DNA interactions in living cells, enabling quantitative analysis of the DNA-interacting proteome on a timescale of minutes with single-amino-aci...

cell.com