Rick Byers Lab

@lab.rbyers.ca

I am a citizen scientist and a molecular biology enthusiast. https://lab.rbyers.ca

Four years ago I missed my favourite conference ("BlinkOn") for a bad cold. It's been the biggest frustration of my lab that I couldn't find the virus that caused it. Now, that I have a 32-way panel from YouSeq.com I finally know why: It was a bacteria, H.Influenzea, not a virus at all!

The 32 targets in the YouSeq respiratory pathogen panel I ran against my 4 year old sample: C. Pneum, Mp. Pneum, L. Pneum, RNaseP, Adeno, M.Catar, P.aerug, EVD68, HPIV1, HPIV2, HPIV3, HPIV4, HRV, HCovOC43, HCoVHKU1, HCoVNL63, HBoV, HCov229E, Haem.Flu, HMPV, FluA, FluB, Covid19, RSV, K.pneum, S.pyoge, S.aurus, C.albic, S.pneum, B.pertu, A.bauma, B.parapThe positive results from the run:
Haem.Flu Cq=27.5
RNaseP (Endo ctrl) Cq=29.1
S.pneum (a common consensual bacteria) Cq=34.6PCR amplification curves for the run. H.influenzae in orange, RNaseP positive control in red and S.pneumn(a common bacteria not necessarily pathogenic) in green.

Instead of spending $2,000 for windows-only software for my new (used) Bio-Rad C1000/CFX96 thermocycler, I have spent the last couple weeks with Claude reverse engineering formats and protocols and building a web app! Check it out: zpcr.rbyers.ca. I'm learning SO much about how qPCR works this way!

Curves view showing PCR amplification plots along with a 96-well grid colored by sample type (green positive control, red no-template control, blue unknown sample) with plus signs for positive results. Also includes a list of respiratory virus targets. Results indicate a strong SARS-CoV-2 positive sample and some weak Enterovius and human B2M control results contaminating the no-template controls.Instrument view showing status for a device attached by USB and prepared to start a new run with a standard thermocycling protocol and a simple two column plate layout corresponding to the results from the last screenshot.A calibration view visualizing the TaqMan fluorophore response by temperature for two fluorophores (FAM and Cy5) using two different types of wells (clear vs. white walled).

I'm trying to adopt agentic engineering practices in my lab work (eg. putting claude code in charge). I was worried it would screw up my pristine data but instead it's really pissing me off by identifying tons of mistakes I've made in my notes over the years!

I finally bought a serious lab qPCR machine: Bio-Rad CFX96 Touch (96 well, 5 channels), compared to my Biomeme Franklin (9 well, 3 channels). Already I can tell I'll be able to do so much more with it!

Home lab bench showing a Bio-Rad CFX96 and other equipment.

I'm working on a blog post for low-cost DIY SARS-CoV-2 PCR testing using a cheap miniPCR and manual fluorescence visualization. Is this visualization of positives vs. negatives clear enough?

7 PCR tubes in the p51lab.info fluorescence viewer. The first four look yellow, the last three look orange.

Three RSV RATs I did at the same time: 1. A shallow (but thorough) nasal swab, fully negative 2/3. Deep mid-turbinate nasal swabs, clearly positive. I'm surprised by the difference. In my PCR tests of other viruses I've seen very little difference from swab depth.

A rapid antigen test with Adeno, RSV and FLU A+B lanes, all three negative.A rapid antigen test with Adeno, RSV and FLU A+B lanes, RSV is positive, Adeno and FLU A+B not run,A rapid antigen test with Adeno, RSV and FLU A+B lanes, RSV positive, Adeno and FLU A+B negative.

Did another Europe cruise with my family, came home harbouring another new virus for my collection. That's three for three: Dec 2023 in the Caribbean: Influenza A July 2024 on the Danube: Parainfluenza 3 Mar 2026 on the Rhine: Respiratory syncytial virus A Perhaps I should be learning something?

Table showing all respiratory viruses I've found in myself since starting my lab.

I sequenced my remaining 3 SARS-CoV-2 samples: - Feb 2025 I had JN.1.4.3.1 - Aug 2025 my son had PQ.24 - Feb 2026 my daughter had PQ.2.8.1 I now have 7 SARS-CoV-2 sequences from my family, nextclade puts them on the phylogenetic tree this way:

Nextclade phylogenetic chart of SARS-CoV-2 viruses from nextstrain.org, my 7 sequences are highlighted with their Pango lineage designation.

My teenage daughter just tested positive for COVID. I'm taking care of her this weekend. It's been two years since I've had COVID and 4 months since my last booster. Will I be able to keep from getting infected?

Positive panbio covid-19 antigen test

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