Happy to share CellAnnotator, a lightweight Python package to query OpenAI models for initial cell type annotations: github.com/quadbio/cell... Inspired by ideas in www.nature.com/articles/s41... and github.com/VPetukhov/GP..., implemented as an scVerse ecosystem package with docs and tutorials.

GitHub - quadbio/cell-annotator: Automatically annotate cell types, consistently across samples.

Automatically annotate cell types, consistently across samples. - quadbio/cell-annotator

github.com

Excited to see moscot out in Nature! This was a great collaborative effort, thanks to everyone involved for making this project a success!

@dominik1klein.bsky.social · 2y ago

Good to see moscot-tools.org published in @nature.com ! We made existing Optimal Transport (OT) applications in single-cell genomics scalable and multimodal, added a novel spatiotemporal trajectory inference method and found exciting new biology in the pancreas! tinyurl.com/33zuwsep

On my first day of joining bluesky, our CellRank project is officially awarded the Helmholtz Software award for scientific originality! This is a great honor for the CellRank dev team, including Philipp Weiler, Michal Klein, and myself. Check out cellrank.org to learn more.

Christoph Feest, PhD@christoph-feest.bsky.social · 2y ago

Software is such an integral part of science - and it is amazing that this year's @www.helmholtz.de Software Award goes to Philip Weiler @helmholtzmunich.de @fabiantheis.bsky.social, Birgit Hassler @DLR and Axel Löwe @kitkarlsruhe.bsky.social 🎉