ReCoN: REconstruction of multicellular COrdination Network We are releasing a new tool to model multicellular coordination and cellular responses in tissu! 🫀🫁 The package is just out, and the preprint should follow within a few days😇 If you want to have a look already: github.com/cantinilab/R...

GitHub - cantinilab/ReCoN: Exploring multicellular coordination from single-cell gene expression / multi-omics using mutlilayer network representations

Exploring multicellular coordination from single-cell gene expression / multi-omics using mutlilayer network representations - cantinilab/ReCoN

github.com

Can't wait to be at @jobim2025.bsky.social #JOBIM25 to present a short demo on the companion ShinyApp (shorturl.at/Os7kB) of our review "Cell-type deconvolution for spatial transcriptomics" recently published in @natrevgenet.nature.com ! #spatial #genomics

Last week to register ! Don't miss this great opportunity

Computational System Biology of Cancer@sysbiocurie.bsky.social · 2y ago

We are welcoming applications to the 8th edition of the International Curie Course on Computational Systems Biology of Cancer, to be held in Paris, September 22-26, 2025. This year the focus will be on multimodal data analysis and network modelling to master cancer hallmarks. 👇 tinyurl.com/57d4ed2v

Yes, there's "accessible" in my group's title. Come at me, Trump! Just kidding, don't come at me, except if you're looking for a job in biomedical AI. Hiring at all levels, up to 100% of E13. If you're enthusiastic about science and open source, consider applying! Please help spread the word. :)

Computational Health Center@comphealthmunich.bsky.social · 2y ago

We‘re excited to welcome @slobentanzer.bsky.social, new PI at the intersection of @diabresearch-dzd.bsky.social and @comphealthmunich.bsky.social @www.helmholtz-munich.de! His group focuses on „Accessible Biomedical AI Research“ - and he‘s hiring! Open positions on slolab.ai and: bit.ly/slolab.

Big turnout today in Paris to show solidarity with US-based scientists ❤️ 🗽 #StandUpforScienceFrance @pasteur.fr

Very grateful to have been awarded a #MSCA post-doc fellowship! With Felix Hol and Teun Bousema, we will bring BuzzWatch to the field to study mosquito behavior in malaria-endemic regions. Starting in #RadboudUmc, our first goal is to make BuzzWatch portable enough to be transported by bicycle 🦟🚲🇳🇱.

Applying LLMs to biomedical research today can go one of two ways: we either use a closed-source web app, or we get coding ourselves. Many researchers lack training for the latter, so their only choice is the former. We want to change that. www.nature.com/articles/s41...

Thrilled to share 'BuzzWatch', my post-doc work with Felix Hol and @lambrechtslab.bsky.social ➡️Filming mosquitoes in a cage with a €15 camera but for 700h(1month) revealed fascinating insights into their behavior⌛🦟🎥⏳ preprint🔍 doi.org/10.1101/2025... DIY guide 🛠️ theomaire.github.io/buzzwatch 🧵⬇️

BuzzWatch: uncovering multi-scale temporal patterns in mosquito behavior through continuous long-term monitoring

Understanding the temporal dynamics of mosquito behavior is essential for developing effective interventions against pathogen transmission. However, limited knowledge exists about the environmental, p...

doi.org

The Mathematics of Artificial Intelligence: In this introductory and highly subjective survey, aimed at a general mathematical audience, I showcase some key theoretical concepts underlying recent advancements in machine learning. arxiv.org/abs/2501.10465

Excited to share our latest #research from @institutcurie.bsky.social on multimodal prediction of #immunotherapy outcome in #lungcancer, published with @springernature.bsky.social in @naturecomms.bsky.social rdcu.be/d56Fn @fondationarc.bsky.social & [PRAIRIE Institute](prairie-institute.fr)

Integration of clinical, pathological, radiological, and transcriptomic data improves prediction for first-line immunotherapy outcome in metastatic non-small cell lung cancer

Nature Communications - Overall survival in metastatic non-small cell lung cancer is improved by immunotherapy but individual responses widely vary, and predictive biomarkers are urgently needed....

rdcu.be

Excited to share the final work from my PhD: our study on developing a signalling network gathering the molecular dysregulations caused by the absence of CFTR in cystic fibrosis (CF). Read the full article published in the journal BMC Genomics at: doi.org/10.1186/s128... 1/5

From CFTR to a CF signalling network: a systems biology approach to study Cystic Fibrosis - BMC Genomics

Background Cystic Fibrosis (CF) is a monogenic disease caused by mutations in the gene coding the Cystic Fibrosis Transmembrane Regulator (CFTR) protein, but its overall physio-pathology cannot be sol...

doi.org