Our paper "Neural timescales from a computational perspective" is finally out in @natneuro.nature.com: www.nature.com/articles/s41... We discuss how computational models and methods can distill empirical observations on neural timescales into quantitative, testable theories of brain computation.

Neural timescales from a computational perspective - Nature Neuroscience

This review integrates computational approaches to provide a unified view on how data analysis methods, biophysical mechanistic models and machine learning approaches can help to uncover the origins a...

nature.com

We congratulate @matthijspals.bsky.social on his successful PhD defense! During his time in the Mackelab, he used RNNs to link neural activity with underlying mechanisms. Now he moved on to a Postdoc position in @durstewitzlab.bsky.social at the ZI Mannheim and the University of Heidelberg.

Both brains and RNNs can re-use components of computation across similar tasks or contexts. But what exactly are those “shared components”? How can they be used to solve several tasks? We address these questions in a new preprint with @avm.bsky.social! Link: www.biorxiv.org/content/10.6...

Interpretable compositional computation with recurrent neural networks

Flexible cognition utilizes reusable components to enable rapid adaptation of behavior to different contexts or tasks. Analysis of artificial neural networks trained on multiple tasks suggested that t...

biorxiv.org

Postdoc position in Paris: come help develop new generation human brain computer interfaces ⚡🧠💻 Interested? Contact me if you have experience with machine learning (e.g. simulation-based inference, RL, generative/diffusion models) or dynamical systems. See below for + details and retweet 🙏

1/7 How should feedback signals influence a network during learning? Should they first adjust synaptic weights, which then indirectly change neural activity (as in backprop.)? Or should they first adjust neural activity to guide synaptic updates (e.g., target prop.)? openreview.net/forum?id=xVI...

Our paper on data constrained RNN that generalize to optogenetic perturbations now citable on eLife: doi.org/10.7554/eLif...

Guillaume Bellec@bellecguill.bsky.social · 2y ago

Pre-print 🧠🧪 Is mechanism modeling dead in the AI era? ML models trained to predict neural activity fail to generalize to unseen opto perturbations. But mechanism modeling can solve that. We say "perturbation testing" is the right way to evaluate mechanisms in data-constrained models 1/8

Finally got the job ad—looking for 2 PhD students to start spring next year: www.gao-unit.com/join-us/ If comp neuro, ML, and AI4Neuro is your thing, or you just nerd out over brain recordings, apply! I'm at neurips. DM me here / on the conference app or email if you want to meet 🏖️🌮

We are looking for a Research Engineer (E13 TV-L) to work at the intersection of #ML and #compneuro! 🤖🧠 Help us build large-scale bio-inspired neural networks, write high-quality research code, and contribute to open-source tools like jaxley, sbi, and flyvis 🪰. More info: www.mackelab.org/jobs/

MackeLab has grown! 🎉 Warm welcome to 5(!) brilliant and fun new PhD students / research scientists who joined our lab in the past year — we can’t wait to do great science and already have good times together! 🤖🧠 Meet them in the thread 👇 1/7

I am super happy to share that our project on training biophysical models with Jaxley is now published in Nature Methods: www.nature.com/articles/s41...

Jaxley: differentiable simulation enables large-scale training of detailed biophysical models of neural dynamics - Nature Methods

Jaxley is a versatile platform for biophysical modeling in neuroscience. It allows efficiently simulating large-scale biophysical models on CPUs, GPUs and TPUs. Model parameters can be optimized with ...

nature.com

Our work on training biophysical models with Jaxley is now out in @natmethods.nature.com. Led by @deismic.bsky.social, with @philipp.hertie.ai, @ppjgoncalves.bsky.social & @jakhmack.bsky.social et al. Paper: www.nature.com/articles/s41...

Jaxley: differentiable simulation enables large-scale training of detailed biophysical models of neural dynamics - Nature Methods

Jaxley is a versatile platform for biophysical modeling in neuroscience. It allows efficiently simulating large-scale biophysical models on CPUs, GPUs and TPUs. Model parameters can be optimized with ...

nature.com

The Macke lab is well-represented at the @bernsteinneuro.bsky.social conference in Frankfurt this year! We have lots of exciting new work to present with 7 posters (details👇) 1/9

I've been waiting some years to make this joke and now it’s real: I conned somebody into giving me a faculty job! I’m starting as a W1 Tenure-Track Professor at Goethe University Frankfurt in a week (lol), in the Faculty of CS and Math and I'm recruiting PhD students 🤗

a man wearing a white shirt and tie smiles in front of a window

ALT: a man wearing a white shirt and tie smiles in front of a window

media.tenor.com

Our #AI #DynamicalSystems #FoundationModel DynaMix was accepted to #NeurIPS2025 with outstanding reviews (6555) – first model which can *zero-shot*, w/o any fine-tuning, forecast the *long-term statistics* of time series provided a context. Test it on #HuggingFace: huggingface.co/spaces/Durst...

DynaMix - a Hugging Face Space by DurstewitzLab

Upload your time series data in CSV or NPY format and generate future forecasts. Configure the forecast length and settings, then download the results as CSV or NPY.

huggingface.co

DurstewitzLab@durstewitzlab.bsky.social · last yr.

Can time series (TS) #FoundationModels (FM) like Chronos zero-shot generalize to unseen #DynamicalSystems (DS)? No, they cannot! But *DynaMix* can, the first TS/DS FM based on principles of DS reconstruction, capturing the long-term evolution of out-of-domain DS: arxiv.org/pdf/2505.131... (1/6)

From hackathon to release: sbi v0.25 is here! 🎉 What happens when dozens of SBI researchers and practitioners collaborate for a week? New inference methods, new documentation, lots of new embedding networks, a bridge to pyro and a bridge between flow matching and score-based methods 🤯 1/7 🧵

Got prov. approval for 2 major grants in Neuro-AI & Dynamical Systems Reconstruction, on learning & inference in non-stationary environments, out-of-domain generalization, and DS foundation models. To all AI/math/DS enthusiasts: Expect job announcements (PhD/PostDoc) soon! Feel free to get in touch.

Jelmer Borst and I are looking for a PhD candidate to build an EEG-based model of human working memory! This is a really cool project that I've wanted to kick off for a while, and I can't wait to see it happen. Please share and I'm happy to answer any Qs about the project! www.rug.nl/about-ug/wor...

The neurons that encode sequential information into working memory do not fire in that same order during recall, a finding that is at odds with a long-standing theory. Read more in this month’s Null and Noteworthy. By @ldattaro.bsky.social #neuroskyence www.thetransmitter.org/null-and-not...

Null and Noteworthy: Neurons tracking sequences don’t fire in order

Instead, neurons encode the position of sequential items in working memory based on when they fire during ongoing brain wave oscillations—a finding that challenges a long-standing theory.

thetransmitter.org

How do animals learn new rules? By systematically testing diff. behavioral strategies, guided by selective attn. to rule-relevant cues: rdcu.be/etlRV Akin to in-context learning in AI, strategy selection depends on the animals' "training set" (prior experience), with similar repr. in rats & humans.

Abstract rule learning promotes cognitive flexibility in complex environments across species

Nature Communications - Whether neurocomputational mechanisms that speed up human learning in changing environments also exist in other species remains unclear. Here, the authors show that both...

rdcu.be

Out today in @nature.com: we show that individual neurons have diverse tuning to a decision variable computed by the entire population, revealing a unifying geometric principle for the encoding of sensory and dynamic cognitive variables. www.nature.com/articles/s41...

Our new preprint 👀

Matteo Carandini@carandinilab.net · last yr.

The firing of neural populations is high-dim even if their subthreshold activity is low-dim! This work by @bio-emergent.bsky.social and @haydari.bsky.social shows how, with a solvable model, a data analysis technique, and data from mouse visual cortex: www.biorxiv.org/content/10.1...

We just pushed “Memory by a 1000 rules” onto bioRxiv, where we use clever #ML to find #plasticity quadruplets (EE, EI, IE, II) that learn basic stability in spiking nets. Why is it cool? We find 1000s!! of solutions, and they don’t just stabilise. They #memorise! www.biorxiv.org/content/10.1...

Memory by a thousand rules: Automated discovery of functional multi-type plasticity rules reveals variety & degeneracy at the heart of learning

Synaptic plasticity is the basis of learning and memory, but the link between synaptic changes and neural function remains elusive. Here, we used automated search algorithms to obtain thousands of str...

biorxiv.org

Great news! Our March SBI hackathon in Tübingen was a huge success, with 40+ participants (30 onsite!). Expect significant updates soon: awesome new features & a revamped documentation you'll love! Huge thanks to our amazing SBI community! Release details coming soon. 🥁 🎉

Please RT🙏 Reach out if you want to help understand cognition by modelling, analyzing and/or collect large scale intracortical data from 👩🐒🐁 We're a friendly, diverse group (n>25) w/ this terrace 😎 in the center of Paris! See👇 for + info about the lab We have funding to support your application!

European Commission@ec.europa.eu · last yr.

Choose Science. Choose Europe. A new Marie Skłodowska-Curie Actions Postdoctoral Fellowships 2025 call is now open. With a budget of €404.3 million, it will support around 1,650 researchers from Europe and beyond. Apply by 10 September → europa.eu/!fBTMgF

🎓Hiring now! 🧠 Join us at the exciting intersection of ML and Neuroscience! #AI4science We’re looking for PhDs, Postdocs and Scientific Programmers that want to use deep learning to build, optimize and study mechanistic models of neural computations. Full details: www.mackelab.org/jobs/ 1/5

Re-posting is appreciated: We have a fully funded PhD position in CMC lab @cmc-lab.bsky.social (at @tudresden_de). You can use forms.gle/qiAv5NZ871kv... to send your application and find more information. Deadline is April 30. Find more about CMC lab: cmclab.org and email me if you have questions.

Excited to present our work on compositional SBI for time series at #ICLR2025 tomorrow! If you're interested in simulation-based inference for time series, come chat with Manuel Gloeckler or Shoji Toyota at Poster #420, Saturday 10:00–12:00 in Hall 3. 📰: arxiv.org/abs/2411.02728

Compositional simulation-based inference for time series

Amortized simulation-based inference (SBI) methods train neural networks on simulated data to perform Bayesian inference. While this strategy avoids the need for tractable likelihoods, it often requir...

arxiv.org

Excited to announce that our paper on "Comparing noisy neural population dynamics using optimal transport distances" has been selected for an oral presentation in #ICLR2025 (1.8% top papers). Check the thread for paper details (0/n). Presentation info: iclr.cc/virtual/2025....

Happening tomorrow morning :).

Machine Learning in Science@mackelab.bsky.social · last yr.

Interested in obtained models that are both interpretable and that can generate realistic neural data? @matthijspals.bsky.social will give a contributed talk on fitting stochastic low-rank RNNs to neural data, Saturday 10:00 at the main conference! 🤩

The @mackelab.bsky.social is represented at @cosynemeeting.bsky.social #cosyne2025 in Montreal with 3 posters, 2 workshop talks, and a main conference contributed talk (for the very first time in Mackelab history 🎉)!