Merlin Szymanski

@merszym.bsky.social

PhD Student @ MPI EVA. Working on ancient human DNA from sediments. Affinity to pipelines and databases.

Hey Hey, a few weeks ago, we released quicksand version v2.6 github.com/mpieva/quick... This version allows the `--taxlvl g` flag to obtain summary statistics and output-files on the genus level. Especially for multi-genus families (e.g. Bovidae or Cervidae), this is much more informative 🐂

GitHub - mpieva/quicksand: A pipeline for the analysis of sedimentary ancient mtDNA.

A pipeline for the analysis of sedimentary ancient mtDNA. - mpieva/quicksand

github.com

UPDATE: The application period for these (amazing, fun, really cool!) sedaDNA PhD positions in our group is March 2-27, but we will start screening applications after the first week. If you are interested, please try to submit *between March 2nd and 8th!* Not by March 1st as I originally wrote..

Benjamin Vernot@benvernot.bsky.social · 6mo ago

Are you interested in human DNA from ancient sediments? Do you want to do a PhD in Vienna? We have two open positions in our group! You can learn more and apply here (scroll down to the very bottom, ours are the last two listings): careers.univie.ac.at/en/praedoc/s...

📢 We're hiring a postdoc (33 months) in human evolutionary genomics / paleogenomics / statistical genetics, Paris 🇫🇷 Project on selection on disease-associated variants, integrating ancient genomes, GWAS, and Ancestral Rec. Graphs. Start May 2026 (flexible). Apply here: emploi.cnrs.fr/Offres/CDD/U...

Portail Emploi CNRS - Offre d'emploi - Postdoc in human evolutionary genetics and bioinformatics (M/F)

Assurez-vous que votre profil candidat soit correctement renseigné avant de postuler

emploi.cnrs.fr

📢Do you work on the (micro-) geoarchaeology of cave sediments? Join our Session #178 at the EAA 2026 Annual Meeting in Athens (26–29 August 2026)! For further details, please scan the QR code below! Abstract submissions open on 19 December 2025! 📢

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I am very excited to present this work to the (sed)aDNA community - and I am looking forward to some cool applications! If you want to use quicksand, I recommend following supplementary section 8, which demonstrates several use-cases :) see github.com/mpieva/quicksand for more details

GitHub - mpieva/quicksand: A pipeline for the analysis of sedimentary ancient mtDNA.

A pipeline for the analysis of sedimentary ancient mtDNA. - mpieva/quicksand

github.com

Molecular Biology and Evolution@molbioevol.bsky.social · 8mo ago

@merszym.bsky.social @janetk.bsky.social et al. develop quicksand, an open-source Nextflow pipeline designed for rapid and accurate taxonomic classification of mammalian mitochondrial DNA in sedimentary ancient DNA samples. 🔗 doi.org/10.1093/molbev/msaf305 #evobio #molbio #compbio #aDNA

Cool work from my colleagues @mpi-eva-leipzig.bsky.social just dropped! Merlin Szymanski, @janetk.bsky.social et al. developed quicksand, a fast, accurate and beautifully designed Nextflow pipeline for taxonomic classification of mammalian mtDNA from ancient sediment DNA. doi.org/10.1093/molb...

quick analysis of sedimentary ancient DNA using quicksand

Abstract. Ancient DNA extracted from the sediments of archaeological sites (sedaDNA) can provide fine-grained information about the composition of past eco

doi.org