We are absolutely thrilled to have arrived in our new offices at the Department of Mathematical Modeling and Machine Learning of the University of Zurich @uzh-ch.bsky.social . Big thanks to our new colleagues for the warm welcome! 🙏 We look forward to shaping the future of AI in Science together!

Our work @tudresden.bsky.social @csbdresden.bsky.social @mpi-cbg.de @scadsai.bsky.social fuses representation learning with spatial statistics @iclr-conf.bsky.social enabling #AI for spatial localization patterns: openreview.net/forum?id=09Y...

Modeling spatial point patterns from noisy, incomplete experimental data just got easier! Great work by @domsturm.bsky.social for sparse, noise-robust model inference of point processes 🤩 @tudresden.bsky.social @csbdresden.bsky.social @mpi-cbg.de Preprint out now: arxiv.org/abs/2510.25550

Robust variable selection for spatial point processes observed with noise

We propose a method for variable selection in the intensity function of spatial point processes that combines sparsity-promoting estimation with noise-robust model selection. As high-resolution spatia...

arxiv.org

🤩👍🏼💪🏼 Meet #TopoSPAM - a high-performance simulation platform for biological morphogenesis with a friendly Python interface. @tudresden.bsky.social @csbdresden.bsky.social @mpi-cbg.de. Solve both continuous and discrete active mechanics! Released today: arxiv.org/abs/2509.24905

TopoSPAM: Topology grounded Simulation Platform for morphogenesis and biological Active Matter

We present a topology grounded, multiscale simulation platform for morphogenesis and biological active matter. Morphogenesis and biological active matter represent keystone problems in biology with ad...

arxiv.org

🤩🤩🤩Absolutely thrilled our work is featured in the Magazine of @maxplanck.de ! Big thanks to the writer and editor 🙏🙏🙏 Never saw our work described so well! Curious? @csbdresden.bsky.social @tudresden.bsky.social @mpi-cbg.de - PDF is freely available, article starts p.36: www.mpg.de/25430399/MPR...

In a beautiful team effort, we wrote a comprehensive review of meshfree collocation methods for numerically solving PDEs @csbdresden.bsky.social @uni.lu #CVUTPrague @tudresden.bsky.social Preprint out now: arxiv.org/abs/2509.20056

An Overview of Meshfree Collocation Methods

We provide a comprehensive overview of meshfree collocation methods for numerically approximating differential operators on continuously labeled unstructured point clouds. Meshfree collocation methods...

arxiv.org

It was a pleasure to speak at #BuildingBridges2025. Germany, Poland, Hungary, and Lithuania - together in one session on #Biomedical #AI. Great also to meet so many friends again! Big thanks to the organizers for inviting me! 🙏🙏🙏🙏 @hzdr.bsky.social @tudresden.bsky.social

🙏 Very honored to speak at #BuildingBridges2025 on #AI for #Biomedicine. What an amazing lineup of panelists 🤩🤩🤩 Politics and Science working together- Germany, Lithuania, Czech Republic, Poland - together for future #AI 👍🏼 @hzdr.bsky.social @csbdresden.bsky.social

Looking forward to present on the topic of AI for Biomedicine tomorrow!

HZDR@hzdr.bsky.social · 11mo ago

The Building Bridges Conference 2025: Latest Findings in Artificial Intelligence kicked off today, bringing together researchers, policymakers and industry leaders from across Europe. #BuildingBridges2025

#GoGAIN25: 🌎 From August 29 to 31, #TUDresden will be in #Boston with @daadworldwide.bsky.social, @humboldt-foundation.de & @dfg.de, presenting a series of talks & hosting a booth to showcase our University of Excellence & the city of Dresden as a hub for science. 🧑‍🔬 ℹ️ tu-dresden.de/internationa...

This👇is fantastic work! Congratulations @loicaroyer.bsky.social and team!!

Loïc A. Royer 💻🔬🧪@loicaroyer.bsky.social · 12mo ago

🧬🔬🧪 🎉 Our team at @czbiohub is thrilled to share TWO companion papers out today in @NatureMethods! 📦 Ultrack — robust, scalable nD cell tracking 🌐 inTRACKtive — a beautiful, open-source web viewer for lineage exploration Let’s dive in! 👇 www.nature.com/articles/s41... www.nature.com/articles/s41...

#GenAI meets perception psychology for better super-resolution microscopy 🤩 Fig.1 says it all! 😎 Fantastic collaboration with @casusscience.bsky.social - work of @zuseschoolsecai.bsky.social students @csbdresden.bsky.social - out now onlinelibrary.wiley.com/doi/10.1002/...

🚨Fundamental computer science result! 🤩🤩🤩 Particle Methods, a class of algorithms, can compute anything that is computable, even when severely resource restricted ‼️‼️Formally proven result @csbdresden.bsky.social @tudresden.bsky.social @mpi-cbg.de now out: fi.episciences.org/16055

On the Computational Power of Particle Methods

We investigate the computational power of particle methods, a well-established class of algorit hms with applications in scientific computing and computer simulation. The computational power of a comp...

fi.episciences.org

To learn more about the people behind this work, we caught up with first author Justina Stark, and corresponding authors Ivo Sbalzarini (@mosaicgroup.bsky.social @csbdresden.bsky.social) and Michael Brand (@tudresden.bsky.social): journals.biologists.com/dev/article/...

Read the #OpenAccess Research Article "Morphogen gradients are regulated by porous media characteristics of the developing tissue" here: journals.biologists.com/dev/article/...

Thanks for the highlight @dev-journal.bsky.social !! 🙏🙏🙏

Development@dev-journal.bsky.social · last yr.

Mind the pores: studying morphogen gradients Read this Research Highlight showcasing work from Justina Stark, Rohit Krishnan Harish, Ivo Sbalzarini @mosaicgroup.bsky.social and Michael Brand @tudresden.bsky.social: journals.biologists.com/dev/article/...

Tagging @mpi-cbg.de @poldresden.bsky.social

Sbalzarini Lab / MOSAIC Group@mosaicgroup.bsky.social · last yr.

⚡️Advanced Computing ❤️ laboratory experiments ➡️ an unbeatable combination to unlock the secrets of biology! Together with the Brand lab @tudresden.bsky.social we @csbdresden.bsky.social discovered a simple mechanism how tissue geometry controls growth: journals.biologists.com/dev/article/...

⚡️Advanced Computing ❤️ laboratory experiments ➡️ an unbeatable combination to unlock the secrets of biology! Together with the Brand lab @tudresden.bsky.social we @csbdresden.bsky.social discovered a simple mechanism how tissue geometry controls growth: journals.biologists.com/dev/article/...

Morphogen gradients are regulated by porous media characteristics of the developing tissue

Summary: Image-based 3D modeling of pore-scale extracellular space geometries of the developing zebrafish embryo reveals that the Fgf8a morphogen gradient is regulated by the porous media characterist...

journals.biologists.com

Our scientific computing framework #OpenFPM now has multistage and adaptive time integrators that scale to distributed CPU clusters and GPUs! Happy supercomputing! @tudresden.bsky.social @csbdresden.bsky.social @mpi-cbg.de preprint: arxiv.org/abs/2309.05331

Integrating Odeint Time Stepping into OpenFPM for Distributed and GPU Accelerated Numerical Solvers

We present a software implementation integrating the time-integration library Odeint from Boost with the OpenFPM framework for scalable scientific computing. This enables compact and scalable codes fo...

arxiv.org

🔥🔥🔥Unique opportunity! We are looking for a new Max Planck Director in Biomedical #AI. Max Planck Research Directors enjoy unparalleled freedom and resources. And the best: you’d get to work with us here at the @csbdresden.bsky.social in the heart of the vibrant @tudresden.bsky.social AI campus!

Max Planck Institute of Molecular Cell Biology and Genetics@mpi-cbg.de · last yr.

Novel Research in Biological Artificial Intelligence: Expressions of interest and nominations for a Max Planck Director to lead research in the field of Biological Artificial Intelligence @mpi-cbg.de and @csbdresden.bsky.social. More information: www.mpi-cbg.de/news-outreac...

Formulas of Life: article of the @maxplanck.de on the research of Ivo Sbalzarini @mosaicgroup.bsky.social. Article in German language: www.mpg.de/24841408/ki-...

Formeln des Lebens

Künstliche Intelligenz mit physikalischem Vorwissen soll biologische Vorgänge berechenbar machen

mpg.de

Ivo Sbalzarini was interviewed by German science radio @detektorfm.bsky.social and explains our research @csbdresden.bsky.social @mpi-cbg.de @tudresden.bsky.social to a general audience (in German only): detektor.fm/wissen/forsc...

Wie kann Künstliche Intelligenz in der Biomedizin helfen?

Biologie und Medizin sind eng verknüpft. Künstliche Intelligenz kann dabei in vielen Fragen helfen. Was ist zu beachten?

detektor.fm

🔥Just out @EGPGV’25: Parallel visualization of distributed volume data for non-convex decompositions! @csbdresden.bsky.social @tudresden.bsky.social @mpi-cbg.de And the best: code is contributed upstream 🤩 diglib.eg.org/items/3aed38...

Fantastic! 🤩 Best success ever for our university!! This is going to enable sooooo much cool new research in the coming years. The sky is the limit!

TU Dresden@tudresden.bsky.social · last yr.

Outstanding success: 🎉 #TUDresden shines with 5 Clusters of Excellence. @dfg.de & @wissenschaftsrat.de announced that decision today. TUD has impressively proven its claim to be a top university for the 21st century. ℹ️ tu-dresden.de/tu-dresden/n...

Proud and happy our group could be involved in this. Congratulations, Roua!

Jesse Veenvliet@jesseveenvliet.bsky.social · last yr.

Revisions were a crazy ride & would never have been possible without the endless efforts by @cryaaa.bsky.social & Alba, as well as all the new collaborators that helped with experiments and modelling: Roua Rouatbi @mosaicgroup.bsky.social @csbdresden.bsky.social, Kathrin Schmeisser @ Rodenfels lab

APR-CNN: Convolutional Neural Networks for the Adaptive Particle Representation of Large Microsco... Joel Jonsson, Bevan Leslie Cheeseman, Ivo Sbalzarini Action editor: Moshe Eliasof https://openreview.net/forum?id=5qKI2dkrjL #cnn #cnns #microscopy

It was great hosting and meeting Sophie Jaffard @csbdresden.bsky.social @tudresden.bsky.social. We look forward to many more discussions on the mathematics of neural networks in neuroscience and in machine learning!

Math for Science at MPI-CBG@math-mpicbg.bsky.social · last yr.

And Sophie Jaffard, also a PhD student from the Université Côte d’Azur in Nice visited Türkü Özlem Çelik and @mosaicgroup.bsky.social to discuss her work on mathematical models of biologically inspired neural networks 🧠

Hello! The CSBD is now sharing news on @bsky.app 🦋

Enabling deep learning on large images with massively reduced compute and resource needs. Meet the content-adaptive APR-CNN architecture! Out now in @tmlrorg.bsky.social - openreview.net/forum?id=5qK...

APR-CNN: Convolutional Neural Networks for the Adaptive Particle...

We present APR-CNN, a novel class of convolutional neural networks designed for efficient and scalable three-dimensional microscopy image analysis. APR-CNNs operate natively on a sparse...

openreview.net

Congratulations, Tommaso! It was a great PhD defense!!!

Zechner Lab@zechnerlab.bsky.social · last yr.

Congratulations Tommaso for an excellent PhD defense! Very well done!