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Michael Schubert

@ms01.bsky.social

Combining computational biology 🧬💻 with outdoor sports in 📍 Innsbruck, Austria • Previously Netherlands Cancer Institute, PhD at EMBL-EBI/Cambridge • 🔗 https://github.com/mschubert

7 Posts119 Follower211 Folgt
Michael Schubert@ms01.bsky.social · 7mo ago

📣 We're #hiring a #PhD student! - Innsbruck - computational - 3 years - fully funded - Deadline: Feb 11th 💼 Project: scRNA-seq analysis on in-house developed cancer atlases 🔍 Looking for: experience in cancer and R/Python 🗓️ Until Feb 11th to bewerbung@i-med.ac.at quoting MEDI-20369

Michael Schubert@ms01.bsky.social · 7mo ago

I can confirm the experience: Using Codex for areas with little experience, LLM code assistants are a game changer. But even in areas close to my expertise, they speed up drafting a lot. For now, I am reviewing changes line by line in either case.

Hadley Wickham@hadley.nz · 7mo ago

I have found claude code tremendously empowering for working in areas where I have little experience. Yes, these are somewhat vibe coded (they are low stakes) but they do have unit tests, and it turns out that I can mostly understand go and swift code with little effort.

Michael Schubert@ms01.bsky.social · 2y ago

I just released version 0.9.7 of the #clustermq #rstats package: mschubert.github.io/clustermq/ _Run your code on HPC or via SSH via one line of code_ Please check it out; feedback is welcome!

Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM, PBS/Torque)

Evaluate arbitrary function calls using workers on HPC schedulers in single line of code. All processing is done on the network without accessing the file system. Remote schedulers are supported via S...

mschubert.github.io

Michael Schubert@ms01.bsky.social · 2y ago

New paper out! 🚨🥳 We thought that passenger gene amplifications can drive cancer vulnerabilities and show that RBM14 does so via cGAS-STING modulation 👇 @vrendo.bsky.social @bendavidlab.bsky.social @rameenberoukhim.bsky.social @foijer-lab.bsky.social

Veronica Rendo@vrendo.bsky.social · 2y ago

So excited to see our paper describing the class of ARGOS genes in cancer out in @naturecomms.bsky.social! 🤩 www.nature.com/articles/s41... A giant effort led with @ms01.bsky.social and executed under the mentorship of @bendavidlab.bsky.social @rameenberoukhim.bsky.social @foijer-lab.bsky.social 🧵👇: