Making the Hidden Visible: A fluorescence lifetime imaging dataset shared via RIKEN’s SSBD repository In this month's @nfdi4bioimage.bsky.social calendar, we present a fluorescence-lifetime imaging microscopy (FLIM) dataset by Conni Wetzker, Marcelo Zoccoler, and Gunar Fabig.

Register for the Boosting Biodata Bootcamp This year, the @nfdi4microbiota.bsky.social conference, 'Boosting Biodata Bootcamp', is being organized in collaboration with the BioData Interest Group: @fairagro.bsky.social, @nfdi4plants.bsky.social, NFDI4Biodiversity and @nfdi4bioimage.bsky.social.

Learn how to program advanced data analysis workflows with the visual programming language #JIPipe using the material of the JIPipe Spring course 2026 given by Ruman Gerst and Zoltan Cseresnyes. To the basic introduction: www.youtube.com/watch?v=KI8r... To the material: jipipe.hki-jena.de/tutorials/

JIPipe Tutorial (2026) - Basic Introduction - JSC2026

A basic introduction into JIPipe. This is an edited recording from the JIPipe Spring Course 2026 (JSC2026). Please note that we experienced issues with the audio recording. You can find all data…

youtube.com

In April, representatives of the Biodata Interest Group, an alliance of six biology-focused @nfdi.de consortia, met to further solidify their collaboration.

FAIRagro@fairagro.bsky.social · 2w ago

Im April haben sich Vertreter*innen von @fairagro.bsky.social @nfdi4plants.bsky.social @nfdi4bioimage.bsky.social @nfdi4objects.bsky.social @nfdi4microbiota.bsky.social und #NFDI4Biodiversity getroffen, um die neue Biodata Interest Group voranzubringen - mehr und zum Bericht auf zenodo: t1p.de/rv25v

Im April haben sich Vertreter*innen von @fairagro.bsky.social @nfdi4plants.bsky.social @nfdi4bioimage.bsky.social @nfdi4objects.bsky.social @nfdi4microbiota.bsky.social und #NFDI4Biodiversity getroffen, um die neue Biodata Interest Group voranzubringen - mehr und zum Bericht auf zenodo: t1p.de/rv25v

Workshop-Bericht der Biodata Interest Group jetzt verfügbar! - FAIRagro

Mitte April haben sich Vertreter*innen der sechs NFDI-Konsortien FAIRagro, DataPLANT, NFDI4Bioimage, NFDI4Biodiversity, NFDI4Objects und NFDI4Microbiota in Berlin beim Julius Kühn Institut getroffen, ...

t1p.de

The following poster involves developing a Galaxy‑based workflow that includes CellProfiler as a native tool, creating a fully reproducible analysis environment for the Cell Painting community. The poster presented at the CytoData Symposium 2026 is available in the next post. 👇

Dieser Vorschlag vonseiten der Konsortien @nfdi4bioimage.bsky.social, NFDI4Immuno, @nfdi4microbiota.bsky.social, @ghga.bsky.social und NFDI4Health steht im Kontext struktureller Veränderungen bei der @nfdi.de. forschungsdaten.info/praxis-kompa...

We are delighted by the Joint Science Conference's decision to extend the @nfdi.de until 2038. 🤗 Together with NFDI4Health, @nfdi4microbiota.bsky.social, NFDI4Immuno and @ghga.bsky.social we will establish the 'Biomedicine' section. Find our joint statement on Zenodo: zenodo.org/records/2129...

The German Human Genome-Phenome Archive@ghga.bsky.social · 3w ago

Together with NFDI4Health, @nfdi4microbiota.bsky.social, NFDI4Immuno and @nfdi4bioimage.bsky.social, we support establishing a Biomedicine Section in the future NFDI to strengthen collaboration, shared standards and responsible biomedical data use. joint statement: zenodo.org/records/2129...

Die #GWK hat in ihrer heutigen Sitzung eine neue Bund-Länder-Vereinbarung (BLV) beschlossen. Bund und Länder wollen #NFDI mit bis zu rund 98,7 Millionen Euro pro Jahr im Zeitraum von 2029 bis 2038 weiterfördern. 🎉 ℹ️ Weitere Infos: www.nfdi.de/gwk-beschlie... #fdm #rdm #researchdata

Last Tuesday, @sweidtkamp.bsky.social, @schmchris.bsky.social, @joshmoore.bsky.social, @antjekeppler.bsky.social and @haesleinhuepf.bsky.social represented @nfdi4bioimage.bsky.social at the @nfdi.de interim report symposium, reporting on the consortium's progress and activities within the community.

📆 New month – new data publication featured in the @nfdi4bioimage.bsky.social wall calendar! The calendar image for July, taken by Pauline Wanjiku Kibui, shows testicular tissue, with the seminiferous tubules depicted in red, the cell nuclei in green, and the actin in the smooth muscle in blue.

A new collection of key concepts and best practices for managing imaging data throughout the research lifecycle, by @ebi.embl.org featuring @nfdi4bioimage.bsky.social contributions from Christian Schmidt, @tom-bssnnt.bsky.social, Josh Moore and Stefanie Weidtkamp-Peters, is now available.

EMBL-EBI Training@training.ebi.embl.org · last mo.

Introducing our new collection on imaging data management, designed to introduce researchers to the key concepts, standards, and community best practices for managing imaging data throughout the research lifecycle: www.ebi.ac.uk/training/onl... #Bioimaging #DataManagement #FAIR #OpenScience

Do you offer courses on research data management at your facility, or are you planning to? Take a look at the slides from the “Train-the-Trainer” workshop on RDM, which took place in May in collaboration with @saxfdm.bsky.social, Come2Data, @scadsai.bsky.social, and @nfdi4bioimage.bsky.social.

OME-Zarr: From Idea to Standard and Beyond? Today, we would like to share with you the presentation slides developed by @joshmoore.bsky.social for a talk in the @bioimagingna.bsky.social Insights and Educational Tools from Industry Series. 👉 Find out more: doi.org/10.5281/zeno...

Team @gerbi-gmb.de and @nfdi4bioimage.bsky.social have arrived at #ELMI2026 in the beautiful city of Coimbra, Portugal! We're super excited about this event, now about to kick off with the Core Facility Day. 🔬

4 days of #ELMI2026 have just come to an end. A huge thank you and congratulations to @ppbioimaging.bsky.social for an outstanding organization and hospitality. It was an honor to participate and represent @nfdi4bioimage.bsky.social's work within this great scientific community. 👏🙏

You can't spell AI without FAIR❗ Here are the presentation slides from @jo-soltwedel.bsky.social talk, "You Can't Spell AI Without FAIR: How Data Management Leaves Footprints in Image Analysis," presented at the #ELMI2026 conference. 👉 Find the presentation on Zenodo: doi.org/10.5281/zeno...

At the #ELMI2026 Core Facility Day, @schmchris.bsky.social presented the BAND (BioImage Analysis Desktop) service by @nfdi4bioimage.bsky.social on behalf of its core developer Yi Sun from EMBL Heidelberg: low-barrier access to powerful compute resources for bioimage analysis available in the cloud.

At #ELMI2026, @lisa-schaefer.bsky.social gave an enlightening talk about how to do surveys in core facilities. We're more than glad to have Lisa's expertise for our survey on bioimaging RDM. The survey is still open until June 20, use your chance to participate: nfdi4bioimage.de/en/community...

Johannes Soltwedel@jo-soltwedel.bsky.social · 2mo ago

Great interactive talk about surveys/interactive survey about talks and cognitive biases from my colleague @lisa-schaefer.bsky.social from @gerbi-gmb.de at #ELMI2026

Our NFDI4BIOIMAGE Summer Newsletter is now available! 🎉 Recently published, it provides updates on news, upcoming events and noteworthy articles from the bioimaging community. 👉 Further information about the newsletter and the registration you can find here: nfdi4bioimage.de/en/news/news...

@nfdi4bioimage.bsky.social data steward Mohsen Ahmadi presented his work on a "Bioimaging Data Management Workflow for Plasma Medicine" at the 11th International Conference on Plasma Medicine (ICPM) in Japan this week. Read more about the workflow here: 👉 www.biorxiv.org/content/10.6...

📅 Investigating in vivo tumor metabolismin in the @nfdi4bioimage.bsky.social wall calendar This image by Dario Livio Longo of the Italian National Research council shows the quantification of glucose consumption in a mouse model of breast cancer using magnetic resonance imaging.

📢 Boosting Biodata Bootcamp 2026: Call for Abstracts verlängert Die Konsortien @nfdi4microbiota.bsky.social, @nfdi4plants.bsky.social, @fairagro.bsky.social, NFDI4Biodiversity und @nfdi4bioimage.bsky.social rufen auf, bis zum 15. Juni 2026 Beiträge einzureichen forschungsdaten.info/praxis-kompa...

Boosting Biodata Bootcamp 2026: Call for Abstracts verlängert

Interessierte sind aufgerufen, noch bis zum 15. Juni 2026 Beiträge einzureichen.

forschungsdaten.info

In March, @haesleinhuepf.bsky.social gave a talk at the University of Copenhagen on “How Generative Artificial Intelligence Impacts Bioimage Data Science,” in which he shared his experience with large language models (LLMs) and vision language models (VLMs) for bioimage analysis. Check it out below.

Robert Haase@haesleinhuepf.bsky.social · 4mo ago

My lecture recording about "How Generative Artificial Intelligence Impacts BioImage Data Science" I gave at @danishbioimaging.bsky.social / Uni Copenhagen is now online! Big thanks to @claraprats.bsky.social, Sonia Diaz Garcia and colleagues for recording and sharing! www.youtube.com/watch?v=Nw40...

Last week, the communications managers from all @nfdi.de di.de consortia met in Mainz to exchange best practices and discuss joint campaigns. 👀

📅 Find the story behind the May image in the @nfdi4bioimage.bsky.social wall calendar and read more about what it takes to make bioimaging data truly reusable here: 👉 nfdi4bioimage.de/en/community... To the corresponding dataset on @bioimagearchive.bsky.social: 👉 www.ebi.ac.uk/biostudies/b...

You can now register for the Boosting Biodata Bootcamp 2026! Gain insights into research data management and data analysis, and learn how to advance your research and make your data and tools #FAIR. To the registration: 👉 events.hifis.net/event/3702/r...

NFDI4Microbiota@nfdi4microbiota.bsky.social · 3mo ago

🚀 Register for the Boosting Biodata Bootcamp now! Join us to discuss #RDM and tools to accelerate your research. ✅ Free of charge 🎟️ Registration: events.hifis.net/event/3702/r... Co-hosted with @fairagro.bsky.social, @nfdi4plants.bsky.social, #NFDI4Biodiversity and @nfdi4bioimage.bsky.social.

📢 Bioimaging folks, your input matters! The NFDI4BIOIMAGE Research Data Management Survey 2026 is live. Help shape future tools, services & training. ⏱️ ~20 min | 🔒 anonymous | 🌍 open to all 👉 nfdi4bioimage.de/en/community... 🗓️ Deadline: April 30, 2026 Please share! 🧬

Great to be guests at the Akademie der Wissenschaften und der Literatur in Mainz joining the @nfdi.de Managementkreis-Präsenztreffen representing @nfdi4bioimage.bsky.social. Many thanks to @nfdi4culture.bsky.social, nfdi4memory, and @nfdi4chem.de for the organization and invitation. #OneNFDI

Researchers from @ufz.de, @scadsai.bsky.social and @nfdi4bioimage.bsky.social present a KNIME-to-Galaxy workflow that extracts KNIME node configurations, processes them using LLM-based imaging, and generates valid Galaxy workflow structures. Find the workflow here: 👉 doi.org/10.5281/zeno...