Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering - Nature Methods

Benchmarking spatially aware clustering is challenging. SACCELERATOR is an open-source, extensible framework that formalizes expert-guided spatial clustering analysis.

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On metrics for subpopulation detection in single-cell and spatial omics data

Benchmarks are crucial to understanding the strengths and weaknesses of the growing number of tools for single-cell and spatial omics analysis. A key task is to distinguish subpopulations within compl...

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An integrated transcriptomic cell atlas of human neural organoids - Nature

A human neural organoid cell atlas integrating 36 single-cell transcriptomic datasets shows cell types and states and estimates transcriptomic similarity between primary and organoid counterparts, sho...

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