OK folks – decision made. I’m spending too much time following all things proteomics and need to move on to pastures new – Immunodiagnostics. Pastel’s website will be available until it’s renewal in 5months time. 1/3

Beyond the Static Caliper: Dynamical Translocases and the Mathematical Imperative for Single-Molecule Proteomics www.biorxiv.org/cont... --- #proteomics #prot-preprint

X-PAIR: an ultrafast multitask framework for proteome-scale reconstruction of PPI networks and partner-specific interfaces from sequence www.biorxiv.org/cont... --- #proteomics #prot-preprint

AlphaFold Database expands to proteome-scale quaternary structures www.researchsquare.c... --- #proteomics #prot-preprint

Formic Acid Enhanced Single-Pot Sample Preparation to Improve Identification Coverage of Membrane Proteome of Laser Capture Microdissected Tissue Sections pubs.acs.org/doi/10.... --- #proteomics #prot-paper

The Metaproteomics Initiative: five years of community-driven progress link.springer.com/ar... --- #proteomics #prot-paper

The need for standardization and improved open (meta)data practices in metaproteomics link.springer.com/ar... --- #proteomics #prot-paper

LABEL-FREE TARGETED PROTEOMICS DATA ANALYSIS WORKFLOW SELECTION – BENCHMARKING AI-BASED AND DATA-DRIVEN APPROACHES www.mcponline.org/ar... --- #proteomics #prot-paper

Improved Protein Identification in Shotgun Proteomics with a Group-Level Extension of the LPGF Model pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Hidden proteins encoded by non-canonical open reading frames: A review www.sciencedirect.co... --- #proteomics #prot-paper

SoftHybrid: A Hybrid Imputation Algorithm Optimized for Single-Cell Proteomics Data pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Remember, once in a Blue Moon, to visit Pastel BioScience's resource pages ... https://t.ly/EP3hr to see updated list of new #proteomics software packages (153) in 2025 &, https://t.ly/Mlk39 for Conferences/Symposia/Webinars etc (11) already available in 2026 --- #proteomics #prot-other

TraianProt: a user-friendly R shiny application for wide format... arxiv.org/abs/2412.1... Link that works for shiny app --- samueldelacamara.shi... --- #proteomics #prot-preprint

SPgen: Proteome-wide Spatial Proteomics generation using multi-modality foundation models www.biorxiv.org/cont... --- #proteomics #prot-preprint

Estimating animal species from blood using in-gel digestion peptide mass fingerprinting pubs.rsc.org/ay/arti... --- #proteomics #prot-paper

ProtSyntax: a protein large language model for decoding post-translational modification syntax and function www.biorxiv.org/cont... --- #proteomics #prot-preprint

Plasma proteome profiling identified biomarkers for the differential diagnosis and molecular staging of neurodegenerative dementias www.nature.com/artic... --- #proteomics #prot-paper

A targeted mass-spectrometry plasma proteome for simultaneous multi-disease screening www.biorxiv.org/cont... --- #proteomics #prot-preprint

Age-dependent Structural Reorganization of the Human Plasma Proteome www.biorxiv.org/cont... --- #proteomics #prot-preprint

MSstatsQC-ML: A Supervised Machine Learning Approach to Monitor System Suitability and Quality Control in Mass Spectrometry-Based Proteomics pubs.acs.org/doi/10.... --- #proteomics #prot-paper

Collection on Forensic Proteomics pubs.acs.org/doi/10.... --- #proteomics #prot-paper

ProLM: a plasma proteomics pretrained model for the general population www.nature.com/artic... --- #proteomics #prot-paper

Enrichment-Free Deep Proteomics Enables Proteome-Scale Analysis of Methionine Oxidation academic.oup.com/dna... --- #proteomics #prot-paper

‘If the shoe fits?’ – Benchmarking plasma proteomic sample-preparation workflows across human and rat biofluids www.mcponline.org/ar... --- #proteomics #prot-paper

Improved Protein Identification in Native Ambient Mass Spectrometry by the Integration of Proton Transfer Charge Reduction and Higher-Energy Collision Dissociation (PTCR-HCD MS3) pubs.acs.org/doi/10.... --- #proteomics #prot-paper

High-Throughput Single-Cell Proteomics Enabled by Integrating nPOP Workflow with Quantitative Hyperplexing pubs.acs.org/doi/10.... --- #proteomics #prot-paper

ARGpredict: A web server to predict arginylation events in a protein www.sciencedirect.co... --- #proteomics #prot-paper

Tandem MICROFASP Method-Enabled High-Sensitivity In Vivo Cross-Linking Mass Spectrometry Analysis of Low-Cell-Number Samples without Enrichment pubs.acs.org/doi/10.... --- #proteomics #prot-paper

A Robust and Generalizable Low-Input Spatial Proteomics Workflow Enabling Deep Proteome Coverage www.biorxiv.org/cont... --- #proteomics #prot-preprint

PeptiVerse: A unified platform for therapeutic peptide property prediction www.nature.com/artic... --- #proteomics #prot-paper