Pete Chuckran

@pchuckran.bsky.social

Postdoc at UC Berkeley studying soil microbes in order to avoid thinking about his own mortality

Our recent publication where the central question was: in soils, are there trademark characteristics of rapidly transcribed genes? And it was a resounding “it depends”. We found gene function, environmental stimulus, and phylogeny all impacted this relationship. More here: peerj.com/articles/206...

The relationship between gene traits and transcription in soil microbial communities varies by environmental stimulus

Codon and nucleotide frequencies are known to relate to the rate of gene transcription, yet how these traits shape transcriptional profiles of soil microbial communities remains unclear. Here we test ...

peerj.com

Wetting dry soil rapidly stimulates microbial activity and has important consequences for biogeochemical cycling. In our paper out today, we show that part of that response can be explained by how bacterial genomes are written (i.e. codon usage, nucleotide freq., genome size) doi.org/10.1073/pnas...

PNAS

Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...

doi.org