Philipp Bayer

@philippbayer.bsky.social

From plant breeding bioinformatics to marine eDNA to rare disease drug development! 'It is required that one man should goof gloriously for the people.'

I cannot rest from discourse. I will see that film again tomorrow. I will drink life to the lees. Again I will enjoy greatly, will suffer greatly, both with those that love me, and in Pleasantville NY. I am become a meme. Film showing: burnsfilmcenter.org/booking/the-...

The Odyssey : Jacob Burns Film Center

The Odyssey, Matt Damon, Tom Holland, Christopher Nolan, Zendaya, Robert Pattinson, Odysseus, Greek, Classic, Antiquity

burnsfilmcenter.org

Ran into a frustrating issue with nf-core/pacvar today: it crashed saying the bam file was malformed. Took a minute of digging but pbalign depends on pbbam, which has a hard-coded check for instrument names that hasn't been updated in years. We have Vega data that wasn't included in the check...

Kids school asked for scientist-parents to come in and talk to kids about science and im sitting here thinking, what's the point? What STEM career could these kids have with the way science funding has depleted and unis are being defunded across the world?

Hmm looks like my bluesky account was taken over and auto-locked. Thanks! From what I can tell, there were two posts tagging random accounts in replies to 'send me money pls' scam posts. Anything else?

The lack of funding is absolutely the driving problem here. Everything is secondary, by a very large margin. ARC needs to be funded 3 times more than it is now. Anything less is just not serious.

An important read clarifying truths about the Ocean Cleanup and why enormous planetary issues require many collaborative, community efforts, not one single, magic, silver bullet approach. Always listen to experts over influencer-types buoyed by social media who claim too-good-to-be-true quick fixes.

David Shiffman, Ph.D. 🦈@whysharksmatter.bsky.social · 3w ago

When I was writing this piece about the Ocean Cleanup, I had a surreal experience: They assured me that they only kill invasive species, and sent me a published paper to demonstrate that. But the paper said the opposite! I wonder how many journalists just took their word for it and didn't check?

I remember reading the 'bootleg-notes' of Borges' lectures on literature to his students and coming out confused - where was the 'difficult' interpretation? Where the reading? Borges just brought infectious love of beauty in literature to the students, quoting endlessly. I loved it

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My coauthor Jay Falk's postdoctoral fellowship was terminated by the Trump administration for documenting the hummingbird example in this paper.

FIGURE 2
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PowerPoint
Operational biological sex definitions applied to hummingbirds (Bleiweiss 1992; Bleiweiss 1999; Bleiweiss 2001; Diamant et al. 2021; Falk et al. 2022; Falk et al. 2021) where sex is operationally defined by binary plumage phenotypes in the field. Each row depicts a wild individual hummingbird with morphological traits (beak length, plumage coloration), behavioural traits (territoriality) and their unobserved gamete type. This example illustrates how the same individual can be operationally defined as one sex in the field (based on external phenotypes) but classified as a different sex based on their gametes (which cannot be easily observed in the field), highlighting how definitional choices shape scientific reporting of sex.
Andy Lee, PhD@andylee.bsky.social · 4w ago

In our Viewpoint (onlinelibrary.wiley.com/doi/abs/10.1...) we synthesize the gametic definition (outlined by Janicke et al below) and other definitions of sex (e.g., multivariate definition). We contend that is NO consensus on “biological sex” (maybe a consensus isn’t actually necessary…)