We had an amazing time in Westgate, Oxford today! We had many attempts to 'bash the bug' and get the high score for the day on our dance mat 💃🕺 where overusing antibiotics causes resistance so you have to be careful what you're prescribing!💊 #AMR #ScienceOutreach #Microbiology #Oxford

We're ready at the @oxfordbrc.bsky.social! Come over and extract strawberry DNA, fight super bugs on the dance mat, or solve the mystery of the hospital outbreak! #AMR #PublicOutreach #Science

Come and try our strawberry DNA extraction! 🍓Find out how this technique can be used by scientists to diagnose infections and choose which antibiotics to prescribe 💊 @oxfordbrc.bsky.social @ox.ac.uk #AMR #Oxford

Come see us at the @oxfordbrc.bsky.social showcase! We'll be in Westgate, Oxford 10-3.30. We'll be bringing the dance mat so come and try to beat the germs with antibiotics and claim the high score💃🕺 #AMR #PublicOutreach @ox.ac.uk

v2.0.0 of AMyGDA released AMyGDA segments images of M. tuberculosis growing on 96-well plates and measures MICs and growth. Developed during @crypticproject.info pypi.org/project/amyg...

amygda

Measure mycobacterial growth on antibiotic plates and infer MICs

pypi.org

Long-read sequencing of Mycobacterial tuberculosis is comparable to short-read sequencing for antimicrobial resistance prediction and epidemiological studies. https://www.biorxiv.org/content/10.64898/2026.04.08.717216v1

Somehow I missed this on #WorldTBDay earlier in the week but it is so good I have to repost it. Check out this comic on “A World without Tuberculosis” bobthesquirrel.art/copy-of-un-m...

Join meeting on Teams

teams.microsoft.com

On #WorldTBDay, it’s important to reflect on the scale of the challenge we’re facing. In 2024 alone, tuberculosis (TB) caused 1.23 million deaths worldwide, remaining the leading cause of death from a single infectious agent, according to WHO @ndm.ox.ac.uk

@wvschaik.bsky.social introducing the Black Knight model for identifying ARGs at #AMR2026. A defining moment or at least an excellent use of a Monty Python analogy. The field needs more off the wall thoughtful comments!

Since 2017 the CRyPTIC project collected and collated 53,897 clinical TB samples with genetics and drug susceptibility testing data. You can download the datasets via crypticproject.info and v4.0.0 will appear later this year. #WorldTBDay @modmedmicro.bsky.social

@zaminiqbal.bsky.social giving an uplifting talk at #AMR2026. As ever he makes me think. 🤔

#AMR2026 about to kick off at the #wellcome genome campus! Got here a bit early so went to visit the new Thornton Building.

Rare opportunity to apply to become a President of Oxford’s newest college! www.nature.com/naturecareer...

President - Oxford job with Reuben College, University of Oxford | 12855105

Reuben College, Oxford, invites applications for the position of President, to succeed Professor Lord Lionel Tarassenko, who will step down as the ...

nature.com

I saw @reduced.bsky.social at the Rep in Bham when I was 17 in 1993. Took my daughters to see the same in Chipping Norton today. Better than I remember it. And my eldest is? 17

20 years ago today I started as a Postdoc at @ox.ac.uk on a six month contract and somehow am still here! 🤯🥳

Our team wore blue for World Antimicrobial Awareness Week 2025💙 Research into how resistance emerges, spreads and can be prevented is vital. Our group works to understand these processes and develop better tools to detect, monitor and combat antimicrobial resistance. #WAAW @oxfordbrc.bsky.social

For #WorldAntimicrobialAwarenessWeek, we introduce our recent paper on antibiotic-resistant subpopulations in TB. TB may be one of humanity’s oldest diseases, yet it still kills over 1M people yearly. As resistance spreads, knowing each patient’s resistance profile before treatment is vital. 🧬💊

Subpopulations in clinical samples of M. tuberculosis can give rise to rifampicin resistance and shed light on how resistance is acquired

AbstractObjectives. WGS has become a key tool for diagnosing Mycobacterium tuberculosis infections, but discrepancies between genotypic and phenotypic drug

academic.oup.com

Antimicrobial resistance occurs when bacteria, viruses, fungi & parasites change over time - leading to medicines being less effective against them. Here you see bacteria growing and antibiotics (the small discs) which kill the bacteria...unless they are resistant! #WAAW #AMR @oxfordbrc.bsky.social

Are you interested in infections, the micro-organisms that cause them and antimicrobial resistance? So are @bashthebug.net and they're looking for new members to join their patient & public group. More info: bashthebug.net/lay-represen... Deadline 27 Nov @ouhospitals.bsky.social @medsci.ox.ac.uk

Bash The Bug (@BashTheBug) / X

Bash The Bug (@BashTheBug) / X

x.com

New paper by @vbrunner.bsky.social looking at detecting rifampicin resistant subpopulations in M. tuberculosis infections using genetics and putting a lower limit on the proportion that arose due to secondary infections. bit.ly/47rwf42 @modmedmicro.bsky.social @oxfordbrc.bsky.social

New paper: What can subpopulations tell us about rifampicin resistance?

Last Thursday this work which we'd previously preprinted looking at looking at rifampicin-resistant subpopulations in clinical M. tuberculosis samples was published in JAC-Antimicrobial Resistance. If...

bit.ly

Pleased to see this pre-printed, highlighting the completeness/accuracy of @nanoporetech.com long-read genome assembly for clinical Enterobacterales: www.biorxiv.org/content/10.1... Thanks to colleagues @modmedmicro.bsky.social, @ukhsa.bsky.social, @genewiz.bsky.social and @oxfordbrc.bsky.social!

Great new work from #DotNagy @modmedmicro.bsky.social - she tool 96 clinical isolates from the NEKSUS study and sequenced with both Illumina and Nanopore - question was, can we do away with hybrid sequencing for the rest of the study? www.biorxiv.org/content/10.1...

Nanopore long-read only genome assembly of clinical Enterobacterales isolates is complete and accurate

Whole bacterial genome sequence reconstruction using Oxford Nanopore Technologies ('Nanopore') long-read only sequencing may offer a lower-cost, higher-throughput alternative for pathogen surveillance...

biorxiv.org

'Linking life expectancy to the bacteria in our gut: A final year undergraduate project'. Akika investigated how the gut microbiome influences longevity, with fieldwork in Nagano, Japan—home to the country’s longest-living population. Read the blog post here ➡️ bashthebug.net/2025/08/22/l...

Bit over 24 hours left to apply for these two posts to help us develop pipelines to process pathogens..! Senior Bioinformatic Engineer bit.ly/4ecl0hF Senior Biostatistical Researcher bit.ly/4kRfZxI Grade 8 or 7, depending on experience closing date: noon Tues 8 July

Mind That Cyclist! Give Him Room 1950 Artist: Roland Davies

Job advert to come and work with me on tuberculosis closes tomorrow (Friday) at noon! Part of #OxCOD4TB bit.ly/4ndKOhF @ndm.ox.ac.uk @modmedmicro.bsky.social @oxfordbrc.bsky.social

Congratulations to the winners of the poster prizes, Elliott Rogers and Iva Grujic, yesterday at the 3rd #Dx4LMIC conference at @reubencollege.bsky.social !

Andrew Singer gets day two underway at the #Dx4LMICs conference at @reubencollege.bsky.social

Lionel Tarassenko introducing Vivian Lee who is giving the after dinner speech at #Dx4LMICs conference at @reubencollege.bsky.social

Jospeth Matovu: HIV self testing among fishermen @reubencollege.bsky.social #Dx4LMICs