scverse conference 2026 will take place in Copenhagen, October 12–14. ✨ Three days of all-things-single-cell and open-source tooling and community in real life. More details soon but for now, mark your calendars. scverse.org/conference20... See you in Copenhagen 🇩🇰

scverse conference 2026

scverse.org

rapids-singlecell 0.15.0 is out now: GPU kernels ship precompiled — no more runtime CUDA compilation. C++ harmony via nanobind, Harmony2 anti-overintegration, contrast-based edistance with split_by stratification, CUDA 12 & 13 wheels, Python 3.14. scverse.org/blog/2026-rs...

Two inspiring days in Berlin just wrapped up with our scverse hackathon on single-cell and spatial proteomics and it’s hard not to feel energized by what this community can do together.

We will have our next community meeting on Tue, March 17, 2026, 11AM CST/ 9AM PST ! Lucas Diedrich and Vincenth Brennsteiner, will be presenting on Alphabase and Alphapepttools: tools to make proteomics analyses easier. Zoom registration link in 🧵

We will have our next community meeting on Tue, March 17, 2026, 11AM CST/ 9AM PST ! Lucas Diedrich and Vincenth Brennsteiner, will be presenting on Alphabase and Alphapepttools: tools to make proteomics analyses easier. Zoom registration link in 🧵

We will have our next community meeting on Tue, March 17, 2026, 11AM CST/ 9AM PST ! Lucas Diedrich and Vincenth Brennsteiner, will be presenting on Alphabase and Alphapepttools: tools to make proteomics analyses easier. Zoom registration link in 🧵

We're excited to announce that registration for our upcoming Spatial Omics workshop has opened! Details in 🧵

We will have our next community meeting on Tue, Feb 17, 2026, 11AM CST/ 9AM PST ! Kexin Huang, will be presenting on Biomni: a general-purpose biomedical agent. Details in 🧵

We will have our next community meeting on Tue, Feb 17, 2026, 11AM CST/ 9AM PST ! Kexin Huang, will be presenting on Biomni: a general-purpose biomedical agent. Details in 🧵

We will have our next community meeting on Tue, Feb 3, 2026, 11AM CST/ 9AM PST ! Philipp A will be presenting on HoloViz: High-level tools to simplify visualization in Python. Details in 🧵

We will have our next community meeting on Tue, Feb 3, 2026, 11AM CST/ 9AM PST ! Philipp A will be presenting on HoloViz: High-level tools to simplify visualization in Python. Details in 🧵

We will have our first community meeting of 2026 on Tue, Jan 20, 2026, 11AM CST/ 9AM PST ! Ian Ferenc Diks (@ianfd.bsky.social) will be presenting on SingleRust: A High-Performance Toolkit for Single-Cell Data Analysis at Scale.

We will have our first community meeting of 2026 on Tue, Jan 20, 2026, 11AM CST/ 9AM PST ! Ian Ferenc Diks will be presenting on SingleRust: A High-Performance Toolkit for Single-Cell Data Analysis at Scale.

We’re looking for a Community Manager to help shape and support the growing scverse ecosystem. Deadline January 10, 2026! More details here: jobs.helmholtz-muenchen.de/jobposting/d...

We will have our final community meeting of 2026 on Tuesday, 2025-12-09 at 11:00 CST/ 9:00 PST! Mikaela Koutrouli (@MKoutrouli) will wrap up a great year of meetings by giving an update on the state of scverse! Zoom registration link for the meeting: lnkd.in/dZpbKKsY

We will have our final community meeting of 2026 on Tuesday, 2025-12-09 at 11:00 CST/ 9:00 PST! Mikaela Koutrouli (@mkoutrouli.bsky.social) will wrap up a great year of meetings by giving an update on the state of scverse! Zoom registration link for the meeting: lnkd.in/dZpbKKsY

We wrapped up an inspiring week with a visit to NVIDIA headquarters right after the scverse conference. Huge thanks to the NVIDIA Healthcare team and @severin7.bsky.social for hosting us and for the great discussions on scaling single-cell analysis and accelerating open science ⚡️

We will have our next community meeting on Tuesday, 2025-11-25 at 11:00 CST! Malte Kuehl (@maltekuehl.com) will be presenting on BioContextAI! More information and Zoom registration link in 🧵

Full house for our Bi[o]hub workshop on Day 3! Communities aren’t just built, they are co-created. Together, we’re shaping an open, connected world of all-things-single-cell research, where sharing tools and ideas drives discovery.

We will have our next community meeting on Tuesday, 2025-11-25 at 11:00 CST! Malte Kuehl (@maltekuehl.com) will be presenting on BioContextAI! More information and Zoom registration link in 🧵

We are proud to announce that we're partnering with @biocontext.ai (biocontext.ai), a new open-source initiative for building agentic systems in biomedical research. Learn more in our announcement: scverse.org/blog/2025-11...

We just released scanpy 1.12rc1 (scanpy.readthedocs.io/en/latest/re...) Highlights: - Dask support in `sc.get.aggregate` for pseudobatching + `highly_variable_genes(flavor='seurat_v3')` - More functions allow specifying `layers` and `obsm` - Turn off quirky behavior (new defaults for scanpy 2.0)

Release notes

Version 1.12: 1.12.0rc1 2025-11-10: Breaking changes: Adopt the Scientific Python deprecation schedule: remove Python ≤3.11 support and officially add Python 3.13 and 3.14 support, require anndata≥...

scanpy.readthedocs.io

We will have our next community meeting on Tuesday, 2025-11-11 at 11:00 CST! Eric Armingol will be presenting on scCellFie! More information and Zoom registration link in 🧵

Excited to see a home for MCP servers in bioinformatics emerge! The community needs a central hub for developing MCP servers for key bioinfo tools. At @scverse.bsky.social we're contributing to this effort - can't wait to share what we're building

Nature Biotechnology@natbiotech.nature.com · 9mo ago

BioContextAI is a community hub for agentic biomedical systems - @puellesv.bsky.social @biocontext.ai go.nature.com/3JmqKux

Meet the keynote speakers for the 2025 scverse conference! Elham Azizi, Associate Professor of Cancer Data Research and Biomedical Engineering at Columbia University 🧵 @elhamazizi.bsky.social @columbiauniversity.bsky.social #scverse #scverse2025 #machinelearning #genomics #cancerimmunology

We're pleased to announce that we are now offering online attendance via Zoom. Remote attendance is available for 30 USD, and you can secure your spot by registering at www.eventbrite.com/e/scverse-co.... We hope to see you online at the conference!

Scverse Conference 2025

From the foundational open-source software in the life sciences — to its large community coming together

eventbrite.com

We will have our next community meeting on Tuesday, 2025-11-11 at 11:00 CST! Eric Armingol will be presenting on scCellFie! More information and Zoom registration link in 🧵

Meet the keynote speakers for the 2025 scverse conference! Erika Alden DeBenedictis, Co-founder of The Align Foundation 🧵 @erika-alden.bsky.social @alignbio.bsky.social @pioneerlabs.bsky.social #scverse #scverse2025 #StructuralBiology #Biotech #Stanford

Meet the keynote speakers for the 2025 scverse conference! John Marioni, Head of Computation at Genentech Research and Early Development and former head of EBI 🧵 #scverse #scverse2025 #AI #DrugDevelopment #MachineLearning #ComputationalBiology #Biotech #Pharma #Genentech

Meet the keynote speakers for the 2025 scverse conference! Panos Roussos, Professor at Icahn School of Medicine at Mount Sinai 🧵 @panosroussos.bsky.social #scverse #scverse2025 #SingleCell #SpatialTranscriptomics #Conference #Keynote