Did you know you can infer CNVs using image-based spatial transcriptomics? Check it out in our latest preprint.

Mats Nilsson's Lab@nilssonlab.org · last yr.

Our latest work is now live on bioRxiv! We use copy number variation inference to uncover tumor clonality from imaging-based spatial transcriptomics data. Check it out: doi.org/10.1101/2025...

🧬If you work with @10xgenomics.bsky.social Xenium, this might be of your interest. Our new study on Xenium exploration best practice and comparing it with other commercial platforms is now out in @naturemethods.bsky.social www.nature.com/articles/s41...

Optimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflows - Nature Methods

This study presents a comprehensive evaluation of Xenium In Situ datasets and provides recommendations on analysis workflows.

nature.com