Apply now for a fully funded #PhD position at the Cologne Graduate School of Ageing Research and become part of our vibrant #AgingResearch commmuny. 🗓️ Deadline: November 3, 2025. ℹ️ More info: www.ageing-grad-school.de 📣 Spread the news!
Thanina
@thancbn.bsky.social
PhD student in computational biology by day, artist by night • 25 • ENG/FR ok :)
i drew the people from my lab ( @compbiogroup.bsky.social ) in front of our new building a few months ago :)
As a reminder, our Omics Ambulance consulting service, is open on Fridays to members of the University of Cologne. Come talk to us!
We have moved to our new home! Our new office is now on the top floor of the Center for Metabolic Research Building!🎉
Halfpipe, our tool for analyzing RNA-seq data from metabolic RNA labeling experiments, is out!!!🎉 Congratulations to Jason and the team including collaborators from @molgen.mpg.de and @uniklinik-fr.bsky.social ! The code is available on GitHub. #RNAseq #SLAMseq #RNAmetaboliclabeling
Yes, if you use generative ai in any creative field, I am actually better than you. There’s no debate
just read a paper about how melanoma incidence in grey horses is due to a cnv and 😊 hihi bioinformatians helped answer this question i've been asking myself for 15 years ! ! ! it's such a cool job that we do
Big update to our tool alevin-fry-atac, for preprocessing of scATAC-seq data (www.biorxiv.org/content/10.1...). The main improvements center around optimizations to mapping speed, reaching almost 3x the speed of chromap at 32 threads. Some opts are general & can be backported to sshash!
Alevin-fry-atac enables rapid and memory frugal mapping of single-cell ATAC-seq data using virtual colors for accurate genomic pseudoalignment
Ultrafast mapping of short reads via lightweight mapping techniques such as pseudoalignment has significantly accelerated transcriptomic and metagenomic analyses, often with minimal accuracy loss comp...
biorxiv.org
Happy International Day of Women and Girls in Science from #CECAD !🌟👩🔬🔬 #February11 Today, we celebrate the extraordinary contributions of women in driving innovation all over the world & stand proud of our female scientists who are shaping the future of aging research. #WomenInScience #WomenInSTEM
Congratulations to Justus @jggil.bsky.social for the successful defense of his Bachelor thesis! 🎉🎓 His thesis "Multi-modal omics data integration using spectral embeddings" expands our work on algorithms for #SpatialTranscriptomics initiated with SpaCo.
We are #hiring! A new head of Medical Statistics is needed in Cologne: www.linkedin.com/feed/update/... #uniköln #unicologne #medicalstatistics #jobalert
Computational Biology Group @IMSB on LinkedIn: Biometriker/in (w/m/d) mit Leitungsfunktion
Job alert!! IMSB (Institute of Medical Statistics and Bioinformatics) is #hiring a new Head of Medical Statistics in Cologne. This position is *permanent* and…
linkedin.com
recycler ou ne pas recycler la classe inversée de CpHMD pour le journal club..................................
Congratulations Till on publishing this collaborative work between University of Cologne @cecad.bsky.social, Goethe University Frankfurt and University Hospital Muenster! www.sciencedirect.com/science/arti...
Matrix-mediated activation of murine fibroblast-like synoviocytes
Fibroblast-like synoviocytes (FLS) are key cells promoting cartilage damage and bone loss in rheumatoid arthritis (RA). They are activated to assume a…
sciencedirect.com
How to do differential expression with scRNAseq data? State of the art is "pseudo-bulk" analysis with RNA-seq methods like edgeR or DESeq2, where "cell type" is encoded as discrete categories. Biologically, discrete categories are not always the most appropriate concept.(1/3) doi.org/10.1038/s415...
Analysis of multi-condition single-cell data with latent embedding multivariate regression - Nature Genetics
Latent embedding multivariate regression models multi-condition single-cell RNA-seq using a continuous latent space, enabling data integration, per-cell gene expression prediction and clustering-free ...
doi.org
maybe i post here abt science or abt art or maybe both !!!!! :) my supervisor wants to make a lab acc anyways