Engelhardt Research Group
@thebeehive.bsky.social
Engelhardt Research Group at Stanford University and Gladstone Institutes. Statistical genomics, live-cell imaging, wearable data, cancer immunology, reproductive health.
Wish I were in Baltimore for this! Looks super exciting and forward thinking.
Alexis Battle@alexisbattle.bsky.social · 11mo agoBaltimore and Hopkins friends - remember to join us for the Malone Center Symposium Monday Dec 8 in the Glass Pavilion: Human + AI: Redefining the Standard of Care in Medicine
Please join us for these incredible papers and discussions with authors on important issues for the NeurIPS community 🤩
B! 🐝 Cavello (they/them)@b-cavello.bsky.social · 11mo agoTODAY is the first-ever #NeurIPS position paper track! Come hear thoughtful arguments about “digital heroin,” the nature of innovation, protecting privacy, machine unlearning, & how we can do ML research better as a community. See you: ballroom 20AB from 10-11a & 3:30-4:30p! #NeurIPS2025 #NeurIPSSD
Super excited to tell you about our preprint on Neighborhood Nonnegative Matrix Factorization (NNMF) for spatially-aware dimension reduction in spatial transcriptomics, led by Ragnhild Laursen in collaboration with Karin Pelka @pelkalab.bsky.social and her lab! www.biorxiv.org/content/10.1...
Neighborhood nonnegative matrix factorization identifies patterns and spatially-variable genes in large-scale spatial transcriptomics data
Tissues consist of multi-cellular neighborhoods in which different cell types express correlated gene programs due to shared signaling environments. Methods for identifying these spatial neighborhoods...
biorxiv.org
Exciting update!! @bioimagearchive.bsky.social is now hosting the first publicly available Incucyte data! If you have live-cell imaging data, please consider uploading to this amazing repository!! Thanks to Julia Carnevale and Alex Marson for experimental data — www.ebi.ac.uk/biostudies/b...
BioStudies < The European Bioinformatics Institute < EMBL-EBI
BioStudies – one package for all the data supporting a study
ebi.ac.uk
Engelhardt Research Group@thebeehive.bsky.social · 2y agoFeedback welcome! And please play with these data! There is a lot more signal there. Thank you to @bioimagearchive.bsky.social for hosting these Incucyte image data -- this is a new thing for them, and they have been so kind in working through the details of submission (link coming soon!)! 🎉
First post in the Good Place! Our preprint on cellular behavior analysis in TCR T cells & cancer cell live-cell imaging data is out! This 3-year collaboration led by pd Archit Verma w/ Alex Marson & Julia Carnevale, with segmentation & tracking by @davidvv & team! www.biorxiv.org/content/10.1...
Cellular behavior analysis from live-cell imaging of TCR T cell–cancer cell interactions
T cell therapies, such as chimeric antigen receptor (CAR) T cells and T cell receptor (TCR) T cells, are a growing class of anti-cancer treatments. However, expansion to novel indications and beyond l...
biorxiv.org
