Tom Fiala

@tomfialab.bsky.social

Senior Scientist and Branco Weiss Fellow at @ethzurich.bsky.social Incoming Assistant Professor at Masaryk University, Brno, Czechia Alumnus of @columbiauniversity.bsky.social, NY Chemical Biology and Supramolecular Chemistry

„Se svojí výzkumnou skupinou studujeme příčinu neurodegenerativních onemocnění,“ říká @tomfialab.bsky.social, držitel start-up grantu pro roky 2026–2028. Nahlédněte s námi do jeho nové laboratoře a zjistěte, na čem společně se svým týmem pracuje. 🎥⤵️ www.youtube.com/watch?v=5sl0...

Start-up grant Nadace Experientia 2026–2028 získává Tomáš Fiala (Přírodovědecká fakulta MUNI)

YouTube video by Nadace Experientia

youtube.com

I believe communicating science and sparking interest in others is as important as doing the actual research. If you love organic chemistry, check out the Chemicator channel on Youtube! Beautiful graphics and nice explainers from an enthusiastic student. www.youtube.com/@Chemicator

ChemiCator

Welcome to ChemiCator! 🔬 Dive Deep into the Fascinating World of Organic Chemistry 🔬 Are you passionate about organic chemistry? Whether you're a student striving for excellence, a curious mind eager...

youtube.com

TWeeP (This Week's Paper): The PTM sulfotyrosine is very hard to reliably identify due to instability and similarity to phosphoTyr. This week, I highlight a vivid debate in @natchembio.nature.com about the existence of sTyr in histones: www.nature.com/articles/s41... www.nature.com/articles/s41...

Mass spectrometry and enzyme assays refute histone tyrosine sulfation - Nature Chemical Biology

Nature Chemical Biology - Mass spectrometry and enzyme assays refute histone tyrosine sulfation

nature.com

We have multiple PhD and Postdoc positions open in my new group at Masaryk University. Are you an excellent and motivated candidate interested in organic and peptide synthesis and chemical biology? Get in touch! Start in January 2026. www.fialalab.com Appreciate sharing!

Bild

Nadace Experientia zná držitele start-up grantu pro rok 2025! 👨‍🔬 Tomáš Fiala, který aktuálně působí na ETH Zürich, založí svoji výzkumnou skupinu na Masarykově univerzitě v Brně, kterou od ledna 2026 podpoří start-up grant Nadace Experientia ve výši 6 000 000 Kč. Moc gratulujeme!

Bild

TWeeP (This Week's Paper): In Biomacromolecules, Mukherjee et al. present a neat way of stabilizing collagen triple helices and inducing their fibrillation via terminal aromatic capping groups. (Plus check out the fun TOC graphic!!) pubs.acs.org/doi/abs/10.1...

Hyperstable and Fibril-Forming Collagen-Mimetic Peptides in Shortest Triple Helices: Empowering the Capping by π-systems

Developing collagen-mimetic peptides (CMPs) with short triple helices and fibril-forming ability remains challenging. Herein, we stabilized short CMPs (3–6 GPO repeats) by attaching extended aromatic π-system─fluorenyl groups at the N-terminus and tyrosine at the C-terminus. These modifications promoted triple helix folding through π–π interactions, acting as a “glue” to stabilize the structure and facilitate fibrillation. A single fluorenyl cap required 5 GPO repeats for helix formation, while double fluorenyl capping reduced this to 4 repeats. Notably, at pH 5.5, triple helices formed with only 3 GPO repeats. The double-capped CMPs exhibited hyperstability (Tm = 76 °C) and formed fibrillar networks at physiological pH. Biophysical and computational studies confirmed the role of π–π and CH–π interactions, along with hydrogen bonding, in stabilization. The minimalistic CMPs supported cell viability, demonstrating their potential for biomedical applications. This strategy offers a method to design highly stable, short CMPs that form robust fibrillar networks.

pubs.acs.org

TWeeP (This Week's Paper): Happy new year! I'm back with my weekly highlights after the holiday break. Let's kick off 2025 with some nice bioconjugation work by Esteve, Koniev, Lehn et al. in #JACS. Dynamic imine formation triggers proximity-driven SNAr on proteins. pubs.acs.org/doi/abs/10.1...

Selective Protein (Post-)modifications through Dynamic Covalent Chemistry: Self-activated SNAr Reactions

SNAr reactions were remarkably accelerated using a pretargeting and activating unit based on dynamic covalent chemistry (DCvC). A Cys attack at the C–F bond on the aromatic ring of salicylaldehyde derivatives was only observed upon iminium formation with a neighboring Lys residue of model small peptides. Such self-activation was ascribed to the stronger electron-withdrawing capability of the iminium bond with respect to that of the parent aldehyde that stabilized the transition state of the reaction, together with the higher preorganization of the reactive groups in the cationic aldiminium species. This approach was further applied for the functionalization of two antibodies. In both cases, the presence of the aldehyde group in close proximity to the reactive C–F bond resulted in a noteworthy increase in bioconjugation yields, with excellent chemo-selectivity. Whereas the modification of an IgG1 antibody led to stochastic product distributions, microenvironment selectivity was noted when employing IgG4, in line with the lower number of Lys residues in the hinge region of the latter. Additionally, the postfunctionalization of the modified antibodies was attained through the dynamic covalent exchange of the tethered iminium derivative with hydrazides, representing an unprecedented “tag and modify” selective bioconjugation strategy based on DCvC.

pubs.acs.org