How specialized are forest fungi 🍄🟫? Very. In our new study of 11 forest substrates, 63% of 2,772 fungal species were found in only a single substrate, and over 70% occurred in fewer than three. 📑 www.sciencedirect.com/science/arti... #Fungi #Mycology #ForestEcology #Ecology #BiodiversityScience
Vladimir Mikryukov
@vmikk.bsky.social
Fungal ecologist. Interested in bioinformatics, metagenomics & statistics. PostDoc at the University of Tartu, 🇪🇪
Do forest fungi prefer to grow in/on specific substrates? Two new papers, including one in Fungal Ecology, examine substrate specificity of boreal forest fungi. doi.org/10.1016/j.fu... doi.org/10.1111/mec.... @tedersoo.bsky.social @drhyfe.bsky.social @sundymaurice.bsky.social
How much does sampling design matter in soil biodiversity surveys? A lot. Our new manuscript shows how diversity changes with sampling design, depth, subsample number, and pooling. I'm especially happy this is the first manuscript from Meirong Chen's PhD work, and very proud of her progress.
20+ years on #Linux, 🧬🖥️ #bioinformatics pipelines daily - and one relaxed moment running a colleague's script nearly wiped my $HOME 😅 Here's how a silent cd+rm combo escaped my project dir, the original script was quite tangled, but it hid this construct [ ⚠️ danger zone, don't run 🔥 ]
Fungal phylum-level classification update now available! Used "innovative taxonomy" to describe >100 taxa, from species to phylum, based on long reads, characteristic nucleotides and env-samples. mycokeys.pensoft.net/article/1616... #fungi #taxonomy #PacBio #classification #eDNA
New article on equitable reuse of public sequencing data, published in @natmicrobiol.nature.com! Led by the Data reuse core team @lhug.bsky.social @environmicrobio.bsky.social Cristina Moraru, @geomicrosoares.bsky.social, @folker.bsky.social and with Anke Heyer and The Data Reuse Consotrium!
Who lives underground? Find out now in our new paper published in @nature.com. Key finding: 90% of predicted mycorrhizal biodiversity hotspots lie outside protected areas. Read here: buff.ly/WmDqAP3 🧵
Post-Doc position for 3 years available jointly between University of Tartu (Estonia) and University of Aarhus (Denmark) on soil microbiome and biogeography. Skills required: bioinformatics, metagenome analysis, microbiology Contact: leho.tedersoo@ut.ee
AM fungi are vital for plants but their global richness remains underexplored. In our latest study, out in Fungal Ecology, we analyzed 4,733 sites, revealing 8,517 G-AMF OTUs (5–15x previous estimates) & 600 E-AMF OTUs, the first global count. Read it for free authors.elsevier.com/c/1kJ7y6ExPy...
🍄📖 Do high-impact journals lead to more fungal species discoveries? Think again! Low or even no-impact factor journals contribute significantly! Let's value research quality over impact metrics in funding and hiring decisions! Read more @MycoKeys: mycokeys.pensoft.net/article/136048