📢 (1/2) Excited to share the first preprint from my PostDoc! We developed UbSeRP to map co-translational ubiquitination in a translatome-wide, revealing thousands of quality control sites, and how they reshape with aging. www.biorxiv.org/content/10.6... #proteostasis #ribosomes #preprint

Ubiquitin selective ribosome profiling reveals systematic principles of co-translational quality control

Protein biogenesis is a stress- and error-sensitive process that can lead to nascent protein misfolding and aggregation, challenging cellular proteostasis. Co-translational ubiquitination (CTU) is a c...

biorxiv.org

#RNA26 @jrrnascientists.bsky.social @rnasociety.bsky.social

So fun sharing our science yesterday! @rnasociety.bsky.social Come talk to me if you missed it! @gagneurlab.bsky.social @mpibiochem.bsky.social @maxperutzlabs.ac.at

Ready for the first full day at the @rnasociety.bsky.social meeting! And come by my poster 234 later today if you want to hear about our AI modeling of mRNA translation at @mpibiochem.bsky.social @gagneurlab.bsky.social @maxperutzlabs.ac.at

So exciting to present my science at the @pintofscience.de ! I love the many interesting questions from the crowd!! 😍 Thank you for organising! @mpibiochem.bsky.social @gagneurlab.bsky.social

Das Herz Bayerns bietet nicht nur großartiges Bier, sondern ist auch die Heimat von großartiger Wissenschaft. 🍻🔬 Besucht uns nächste Woche in #Munich und erfahrt mehr über Gesundheit 🏥, Umwelt 🏞️, Quants ⚛️ und vieles mehr. Die Tickets sind fast ausverkauft, jetzt sichern! #pint26de #pint26

Such a lively seminar series on AI for Biomolecules!! It was great being able to present our work at @epfl-ai-center.bsky.social !! Thanks to the organisers Raphaëlle and @vincentjung.bsky.social @gagneurlab.bsky.social Danny Nedialkova (@mpibiochem.bsky.social @maxperutzlabs.ac.at)

Congrats Danny!!

Max Perutz Labs Vienna@maxperutzlabs.ac.at · 5mo ago

Fantastic news! 🙌 The Perutz is excited to welcome Danny Nedialkova as a new group leader starting this April! 🎉 She will strengthen the institute's research on the fundamental mechanisms that shape cellular physiology and disease ➡️ www.maxperutzlabs.ac.at/research/res...

It is always a lot of fun to share science. So happy to take part in the @mpibiochem.bsky.social Open Day!

Max Planck Institute of Biochemistry@mpibiochem.bsky.social · 10mo ago

From DNA to proteins: How do we investigate how life unfolds? ✨ Hands-on, minds-blown: Get exciting insights into our leading life-science research in Martinsried at our Open Day! Find out more (in German): mpi.lineupr.com/tdot/

Are you looking for a PhD? Join us in Barcelona! You'll dive into a community of >100 PhD students from 30 countries exploring the frontiers of biology. You can also join an online workshop on 6 November (15:00 CET) to learn how to find the right lab for you. More info: www.crg.eu/en/content/t...

Torna l'OBCatalunya que arriba a la 16a edició‼️ Repetim l'experiència i esperonem les vocacions científiques i el gaudi de la Biologia 🔔 Docents de #biologia, ja podeu inscriure els vostres alumnes 🔚 9/12 🔗 https://cbiolegs.cat/2025/10/21/torna-olimpiada-de-biologia-de-catalunya-obc-2026/

Here our next RNA Club! 📅 24/09/25 📍 @mpibiochem.bsky.social We will hear great talks from Selay Kaya (Nedialkova lab), Pierfrancesco D'Orlando (Rad lab), Gesine Behrens (Heissmeyer lab), Christopher Kuhn (Conti lab) and Kathrin Halter (Carell lab)! See you there!

Congrats for the poster prize at #EMBLProtein, Xavi @xavierheal.bsky.social‬ ! Wonderful to dissect the translational response to metabolic shifts with time series of ribosome profiling and AI. Exciting multidisciplinary project. So glad to work with you and Danny Nedialkova on this.

Xavier Hernandez Alias@xavierheal.bsky.social · 11mo ago

Exciting science at the #EMBLProtein meeting, and still one more day ahead! If you missed it, come today by my poster 130 to learn about our work at Nedialkova's @mpibiochem.bsky.social and @gagneurlab.bsky.social !

Exciting science at the #EMBLProtein meeting, and still one more day ahead! If you missed it, come today by my poster 130 to learn about our work at Nedialkova's @mpibiochem.bsky.social and @gagneurlab.bsky.social !

🚨🚨🚨 Please RT! We're looking for a postdoc to join an exciting joint project between our lab @upf.edu & @crg.eu (Barcelona) and the Sander lab @mdc-berlin.bsky.social (Berlin) investigating how alternative splicing and microexons influences the maturation of pancreatic islets. Deadline: 30/09/25👇

Extremely vibrant and amazing science at the EMBO Fellows' meeting, thank you @embo.org for organizing! It is so exciting getting to know so many excellent scientists that share the same passion for research!!

EMBO@embo.org · last yr.

The EMBO Fellows’ Meeting 2025 is taking place in Heidelberg, DE from 27 June–1 July. Over 100 EMBO Fellows from 30+ countries will present their projects, #network, receive #training and #mentoring, speak with EMBO Press editors and learn about new EMBO #policy and #sustainability initiatives. 🧪

Update of our protein outlier caller PROTRIDER. We now handle missing values, a widespread issue for mass spec where missing values are not a random -- and this improves outlier detection on non-missing data! Thumbs up to Daniela and George for the great work. doi.org/10.1101/2025...

Gagneur lab@gagneurlab.bsky.social · last yr.

Excited to share that PROTRIDER, our method to call outliers on mass spectrometry-based proteomics data, is out now!! #proteomics #massspectrometry #raredisease doi.org/10.1101/2025...

This year, the lab has a great representation at the #eshg2025: 3 talks, 2 posters, 1 spin-off stand ! 1/n

What a fun and amazing experience to be this year at the other side of the stage @pintofscience.de! 🙈 Thank you for organizing and everyone for participating. I think it was the most exciting and also toughest Q&A session ever! 😊 @mpibiochem.bsky.social @gagneurlab.bsky.social

Take you agendas for our next RNA club! 📅4th June 2025 15h 📍@www.helmholtz-munich.de We will hear great talks from Patrick Schinke (@marsico-lab.bsky.social), Niklas Petzold (@sattler-lab.bsky.social), and Christoph Mueller-Hermes (Dueck's lab @tum.de). See you there!

Amazing conference on the application of AI in RNA biology! With great science and and better scientists. Thrilling share and discuss such exciting topics and to be part of this emerging field! @gagneurlab.bsky.social @mpibiochem.bsky.social

I am very happy to participate in this year's @pintofscience.de!! I will be giving a talk on AI and biology May 20th at the Keg bar. Don't miss this and other events, tickets are out! @gagneurlab.bsky.social @mpibiochem.bsky.social @tum.de

Pint of Science Germany@pintofscience.de · last yr.

In #Munich there are a lot of scientists doing cool research 👩🏼‍🔬👨🏽‍🔬 Do you already know them? You can come and meet them at our festival, the #pint25de! They'll wait for you in your favourite pubs and cafes, with events in 🇩🇪 & 🇬🇧 Programme & tickets 👇 www.pintofscience.de #München #wisskomm

Join us for our next Kipoi Seminar with Laura Martens, Gagneur lab, TUM @lauradmartens.bsky.social @gagneurlab.bsky.social @tum.de 🐕scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution 📅Wed May 7, 5:30pm CET 🧬https://kipoi.org/seminar/ 🦋kipoizoo.bsky

Ready for 4 days full of talks and posters on RNA and AI, in the beautiful Ascona! #rnaai

Sunsets from @mpibiochem.bsky.social 😍

On Wed., Pedro @pedrotomazdasilva.bsky.social talks about interpreting DNA Language models through nucleotide dependency analyses. Capturing functional interactions -maps like this one for an intron- and more: RNA structures, reg motifs,... preprint: www.biorxiv.org/content/10.1...

Kipoi@kipoizoo.bsky.social · 2y ago

Join us for our next Kipoi Seminar with with Pedro Tomaz da Silva @pedrotomazdasilva.bsky.social @gagneurlab.bsky.social @TU_Muenchen! 👉Nucleotide dependency analysis of DNA language models reveals genomic functional elements 📅Wed Feb 5, 5:30pm CET 🧬https://kipoi.org/seminar/ 🦋kipoizoo.bsky

Join us in our next #MunichRNA19F! 📍 @mpibiochem.bsky.social 📅 19/02/2025 We will hear amazing talks from Shuyao Sha (@kusterlab.bsky.social), @lauradmartens.bsky.social (@gagneurlab.bsky.social), @michaelkugler.bsky.social (@hopfnerlab.bsky.social), Marc Schmitt-Supprian. Don't miss it! 🧬😀

🚨🚨🚨 If you're a bioinformatician who loves: 🧬 #SingleCell #LongReadSequencing & #AlternativeSplicing 🚀 Collaborating and travelling Apply to work with us at the spectacular BIMSB (@mdc-berlin.bsky.social) in Berlin + @upf.edu-@crg.eu in Barcelona. Qs: www.transdevolab.com Please RT! 🙏

Hey reg genomics folks, here is our little x-mas present: Flashzoi. Borzoi. Just as good. 3x faster. Thumbs up to @johahi.bsky.social for the great initiative, conception & implementation. Big thanks to Johannes Linder, David Kelley and colleagues to have created Borzoi and shared it freely.

bioRxiv Genomics@biorxiv-genomic.bsky.social · 2y ago

Flashzoi: An enhanced Borzoi model for accelerated genomic analysis https://www.biorxiv.org/content/10.1101/2024.12.18.629121v1

Thank you @upf.edu @crg.eu for making my PhD journey so amazing! I am honored to have received the Extraordinary Award. And a special thanks to my PhD supervisors @martinschaefer.bsky.social and Luis Serrano. Moltes gràcies!

Universitat Pompeu Fabra@upf.edu · 2y ago

Aquesta tarda hem celebrat l'acte de lliurament dels Premis Acadèmics de Grau, Màster i Doctorat 2024 de la #UPFBarcelona. Enhorabona #ExtraordinarisUPF!