@yangkl96.bsky.social
A New Detailed Mass Offset Search in MSFragger for Improved Interpretation of Complex PTMs #JProteomeRes pubs.acs.org/doi/10.1021/...
A New Detailed Mass Offset Search in MSFragger for Improved Interpretation of Complex PTMs
Conventional database search methods for proteomics struggle when tasked with identifying dozens or hundreds of modifications simultaneously. Open or error-tolerant searches can address this limitatio...
pubs.acs.org
So glad to see this online today! With FragPipe and the many other Koina APIs, we wanted to democratize deep learning, especially for those without access to expensive GPUs. Major kudos to my co first author Ludwig for setting up the server. I encourage ML developers to put their models on Koina
Ludwig Lautenbacher@llautenbacher.bsky.social · 9mo agoExited to share our latest work! Out now in @natcomms.nature.com Koina aims to transform how #proteomics uses machine learning. You no longer need to be a tech wizard to use ML and now can easily run #ML models. Integrated with FragPipe, Skyline and EncyclopeDIA! www.nature.com/articles/s41...