ace-gtdb.bsky.social
@ace-gtdb.bsky.social
Genome Taxonomy Database (GTDB; https://gtdb.ecogenomic.org) is an initiative to establish a standardised microbial taxonomy based on genome phylogeny.
🎉 We are honoured and excited to share that our team has been named a finalist in the the Australian Research Data Commons Eureka Prize for Excellence in #DataPlatforms! 🎉 Check out our video at: www.youtube.com/watch?v=1nzt... @ardc.edu.au @eurekaprizes.bsky.social #EurekaPrizes
Genome Taxonomy Database – Finalist, 2026 Eureka Prize for Excellence in Data Platforms
YouTube video by Australian Museum
youtube.com
GTDB release 11 based on RefSeq 232 (R11-RS232) is live at gtdb.ecogenomic.org. This release covers 901,341 genomes (23% increase) and has 199,923 species clusters (39% increase). Release notes at: forum.gtdb.ecogenomic.org/t/announcing.... Release statistics at: gtdb.ecogenomic.org/stats/r232.
GTDB - Genome Taxonomy Database
The Genome Taxonomy Database (GTDB) is an initiative to establish a standardised microbial taxonomy based on genome phylogeny.
gtdb.ecogenomic.org
Notice for users submitting MAGs to INSDC Issue: MAGs submitted to INSDC without taxonomic annotations, typically listed as ‘metagenome’, are not included in GTDB. Examples: www.ncbi.nlm.nih.gov/datasets/gen... What to do: Provide at least a domain-level taxonomic affiliation in the Taxon field.
Genome
Download a genome data package including genome, transcript and protein sequence, annotation and a data report
ncbi.nlm.nih.gov
GTDB is now on LinkedIn! www.linkedin.com/company/geno....
Genome Taxonomy Database | LinkedIn
Genome Taxonomy Database | 3 followers on LinkedIn. GTDB is an initiative to establish a standardised microbial taxonomy based on genome phylogeny | The Genome Taxonomy Database (GTDB) is an initiativ...
linkedin.com
GTDB is now cross-referenced from ENA genome assembly pages. Check it out: www.ebi.ac.uk/ena/browser/.... Thank you to @ebi.embl.org for support with setting up these links!
ENA Browser
ENA Browser
ebi.ac.uk
The GTDB website now has an ANI calculator based on skani that supports uploading of user genomes. Try it at gtdb.ecogenomic.org/tools/skani. Find more information about @jimshaw.bsky.social fantastic tool at www.nature.com/articles/s41....
GTDB - skani calculator
An interface to compute pairwise ANI of NCBI genomes using the GTDB taxonomy.
gtdb.ecogenomic.org
Our @narjournal.bsky.social manuscript is out! It explores the growth of the GTDB (gtdb.ecogenomic.org) since its inception, as well as updates to the website, methodology, policies, and major taxonomic and nomenclatural changes over the past three years. academic.oup.com/nar/advance-...
GTDB release 10: a complete and systematic taxonomy for 715 230 bacterial and 17 245 archaeal genomes
Abstract. The Genome Taxonomy Database (GTDB; https://gtdb.ecogenomic.org) provides a phylogenetically consistent and rank normalized genome-based taxonomy
academic.oup.com
GTDB release 10 based on RefSeq 226 (R10-RS226) is live at gtdb.ecogenomic.org. This release covers 732,475 genomes (22% increase) and has 143,6141 species clusters (37% increase). Release notes at: forum.gtdb.ecogenomic.org/t/announcing.... Release statistics at: gtdb.ecogenomic.org/stats/r226.
GTDB - Genome Taxonomy Database
The Genome Taxonomy Database (GTDB) is an initiative to establish a standardised microbial taxonomy based on genome phylogeny.
gtdb.ecogenomic.org
GTDB release 9 based on RefSeq 220 (R09-RS220) is live at gtdb.ecogenomic.org. This release covers 596,859 genomes (48% increase) and has 113,104 species clusters (33% increase). Release notes at: forum.gtdb.ecogenomic.org/t/announcing.... Release statistics at: gtdb.ecogenomic.org/stats/r220.
GTDB - R220 Statistics
Statistics describing GTDB release R220.
gtdb.ecogenomic.org
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