Join us at the first @cshlnews.bsky.social (CSHL) meeting on Cell Modeling in Space and Time, taking place June 22-25, 2026 💫 Abstract deadline is April 10th, meetings.cshl.edu/meetings.asp... Read the @focalplane.bsky.social post focalplane.biologists.com/2026/04/03/c...

Cell Modeling in Space and Time at CSHL - FocalPlane

Cell Modeling in Space and Time at CSHL -

focalplane.biologists.com

@erinweisbart.bsky.social & @bethcimini.bsky.social discuss our recent paper on anomaly-based representations for image-based phenotypic profiling. They explain how we encode morphological inter-feature dependencies while maintaining biological interpretability 🔥 📄 Paper: doi.org/10.1016/j.ce...

Ask Erin / Dear Beth@askerindearbeth.bsky.social · 5mo ago

Ep 27- have you heard deep learning called a "black box"? It often is, but this week, @erinweisbart.bsky.social tells @bethcimini.bsky.social about a cool paper from the @assafzaritsky.bsky.social team (and Erin!) using DL to make Cell Painting even more powerful, but still interpretable. So fun!

🚨 New @biorxivpreprint! 🧬💻 Can the spatial architecture of chromatin predict chemoresponse? We integrated FLIM imaging + ML to show that spatially organized "open" chromatin states in pre-treatment biopsies predict resistance in TNBC. www.biorxiv.org/content/10.6... 🧵 1/3

TOMORROW is the deadline to apply for the #LakeConference on Modeling Life from Cells to Tissues! 📆 April 20-22, 2026 📍 Seattle, USA 🧠 All career stages welcomed. Learn more and apply: https://alleninstitute.org/events/aics-lake-2026/ #StemCell #DevBio

Join us TODAY (4 pm, Room118) for the "Future of Cell Biology" session at #CellBio2025! Hosted by the @ascbiology.bsky.social's journal Molecular Biology of the Cell (MBoC) Hope to see you there ☺️

Our paper is out ✨ doi.org/10.1016/j.ce... We propose a self-supervised anomaly representation that encodes morphological inter-feature dependencies for high-content image-based cell phenotyping! 1/3

Excited to announce the first @cshlnews.bsky.social meeting on Cell Modeling in Space and Time, June 2026 💫 meetings.cshl.edu/meetings.asp... Bringing together experiments, computation and theory to explore dynamic, multi-scale cellular organization and function! 1/3

Nature Biomedical Engineering is hiring again! This time we're hoping to add an editor with machine learning expertise to the team (although we are open to those with other relevant expertise!) Deadline is Oct 20. Please RT! springernature.wd3.myworkdayjobs.com/SpringerNatu...

📢We're #hiring Group Leaders! Apply to lead a lab at Janelia & advance biology using theory, computational modeling & machine learning. 🔹5-year renewable appointment 🔹Pioneer new tools & approaches 🔹Collaborate across disciplines Apply by Nov. 4👉 https://janelia.link/groupleader

We are searching for an enthusiastic scientist to join our team and establish annual killifish as a model system for early developmental biology and biophysics! @embl.org @embldbunit.bsky.social Apply here: embl.wd103.myworkdayjobs.com/EMBL/job/Hei... Please re-post 🙏

How do organelles change over the course of a stem cell’s life? ADIs @cohenlaboratory.bsky.social, @assafzaritsky.bsky.social , and @mattersoflight.bsky.social are using ML and cell engineering to explore the #FrontierScience of stem cell differentiation. alleninstitute.org/division/fro...

Data-driven modeling of inter-organelle dynamic interactions throughout differentiation with multispectral and label free live imaging

With funding from the Allen Distinguished Investigators program, these investigators hypothesize that complex and dynamic patterns of organelle connection and communication are distinctive across diff...

alleninstitute.org

BIG start to #mmc2025 with Assaf Zaritsky giving an awesome opening plenary. @royalmicrosoc.bsky.social @eurobioimaging.bsky.social @globias.bsky.social @bioimaginguk.bsky.social @globalbioimaging.bsky.social

Super excited to share our new method: Context-dependent Identification of Spatial Motifs (CISM)! 🚀 A two-step approach for uncovering fine-scale intercellular modules associated with human disease states from single-cell spatial data. doi.org/10.1101/2025... 🧵 1/n

Unveiling crucial insights into nuclear growth in hiPSC colonies. By analyzing 3D timelapse data, our Cell Science team has shown how cell lineage & environment shape cellular behavior. This timelapse illuminates the height of nuclei from 4μm (turquoise) to 11μm (fuchsia). 🔗👇

MBoC (@ascbiology.bsky.social Society Journal) is Looking for Early-Career Editorial Board Members! www.ascb.org/society-news... Submit your application by May 22, 2025!

MBoC is Looking for Early-Career Editorial Board Members — Join Us!  - ASCB

Are you a senior postdoc or early-career faculty member who’s passionate about publishing, peer review, and amplifying great science? We’d love for you to consider joining the Molecular Biology of the...

ascb.org

"This symposium explores the power of microscopy imaging as a data-rich resource for quantifying cellular phenotypes, with a strong focus on high-content imaging techniques such as Cell Painting and their applications in drug discovery and basic cell biology" cytodata25.eu-openscreen.eu

You want to use LLMs for your research, but don't know what they can be used for? And whether their use is compatible with good scientific practice? Then this introduction by @haesleinhuepf.bsky.social might be the right thing for you. Find the slides here: zenodo.org/records/1441...

Very happy to share our new preprint "MODIS: Multi-Omics Data Integration for Small and Unpaired Datasets"! We proposed a new coupled variational auto-encoder architecture to solve the problem of data integration for small and unpaired datasets (diagonal integration) arxiv.org/abs/2503.18856

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