austin (he/him)

@austinjgraham.bsky.social

Postdoctoral Fellow with @ZevGartner at @UCSF & @CZBiohub. Science 🧬🦠, live music 🎶, and brews ☕️🍺. B.S. UCSB ‘16 🌊, Ph.D. UT Austin ‘21 🤘. he/him 🏳️‍🌈 i think i need more emojis

Biohub engineers, led by Rafael Gómez-Sjöberg & Michelle Khoo, designed and built the 3D organoid bioprinter for this work, which will help improve research on how our organs form and function, and develop new treatments for disease. New in @natmater.nature.com

UCSF@ucsanfrancisco.bsky.social · 5mo ago

Organs grow in a body that shape-shifts with them. UCSF scientists invented a gel that mimics this soft support and 3D printed stem cells into it - reliably seeding mini-organs that could speed drug testing in petri dishes. https://tiny.ucsf.edu/Rr2BvW

SFB is always with so much fun! Gave my first talk on my postdoc work at #SFB2025, modulated a session, got 1st place in postdoc recognition award (really grateful for the opportunity and support) and first-time talking in a huge grand ballroom😂, and reunited with my lovely PhD lab!

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Excited to share my recent works elucidating the role of spatial confinement in 3D models of pancreatic ductal adenocarcinoma!

Differential Effects of Confinement on the Dynamics of Normal and Tumor-Derived Pancreatic Ductal Organoids

Pancreatic ductal adenocarcinoma (PDAC) is a cancer of the epithelia comprising the ductal network of the pancreas. During disease progression, PDAC tumors recruit fibroblasts that promote fibrosis, increasing local tissue stiffness and subjecting epithelial cells to increased compressive forces. Previous in vitro studies have documented cytoskeletal and nuclear adaptation following compressive stresses in two-dimensional (2D) and three-dimensional (3D) environments. However, a comparison of the responses of normal and tumor-derived ductal epithelia to physiologically relevant confinement remains underexplored, especially in 3D organoids. Here we control confinement with an engineered 3D microenvironment composed of Matrigel mixed with a low yield stress granular microgel. Normal and tumor-derived murine pancreas organoids (normal and tumor) were cultured for 48 h within this composite 3D environment or in pure Matrigel to investigate the effects of confinement on morphogenesis and lumen expansion. In confinement, tumor organoids (mT) formed a lumen that expanded rapidly, whereas normal organoids (mN) expanded more slowly. Moreover, a majority of normal organoids in more-confined conditions exhibited an inverted apicobasal polarity compared to those in less-confined conditions. Tumor organoids exhibited a collective “pulsing” behavior that increased in confinement. These pulses generated forces sufficient to locally overcome the yield stress of the microgels in the direction of organoid expansion. Normal organoids more commonly exhibit unidirectional rotation. Our in vitro microgel confinement platform enabled the discovery of two distinct modes of collective force generation in organoids that may shed light on the mutual interactions between tumors and the microenvironment. These insights into in vitro dynamics may deepen our understanding of how the confinement of healthy cells within a fibrotic tumor niche disrupts tissue organization and function in vivo.

pubs.acs.org