Only few days left to apply! This event is relevant both for wet lab biologists who want to learn more about spatial OMICs and get initiated to data analysis and for bioinformaticians who want to learn about the latests developments in spatial OMICs.

Yad Ghavi-Helm@yghavi.bsky.social · 3mo ago

📢Join us for the Spatial-Cell-ID #spatialOMICs Summer School, September 13-18th 2026, at the Centre Paul-Langevin in Aussois, in the French Alps! You can find the full scientific program, our speakers, and the application form on our website: spatial-cell-id.github.io/scid2026/ Please share!

Very excited to share our latest paper, in which we developed an approach to answer a central question: Is cell fate more dependent on a cell lineage or a cell direct neighbors? Surprisingly, when analyzing single cell trajectories, we showed that C. elegans exhibit both

Are you passionate about the mathematics of data science, computational geometry and topology and want to apply your skills to a beautiful biological question? Come do a PhD with us! You will help us understand of how boundaries are established and maintained in early heart development.

Congratulations to Dr @baalberti.bsky.social !! 🎉 And many thanks to his jury members @randersson.bsky.social @arnausebe.bsky.social @olivier-gandrillon.mastodon.social.ap.brid.gy Marie Sémon Anouck Necsulea and co-supervizor @paulvilloutreix.bsky.social

It's done! I am now a PhD for real! I defended my PhD thesis last week and what an incredible day it was. I am very grateful to all the members of @igflyon.bsky.social who made these last 4 years and 8 months so memorable. I will cherish all these memories 😊

Happy to share STORIES out now on Nature Methods STORIES learns cell fate landscapes from spatial tramscripromics data profiled at several time points, thus allowing prediction of future cell states. Led by Geert-Jan Huizing and Jules Samaran www.nature.com/articles/s41... @pasteur.fr

STORIES: learning cell fate landscapes from spatial transcriptomics using optimal transport - Nature Methods

By learning a differentiation potential using an optimal transport-based approach, STORIES models and infers cell fate trajectories using spatiotemporal omics data.

nature.com

Ever wondered what drives enhancer-promoter specificity? Why would an enhancer activate one gene rather than another neighboring one? Check our latest preprint, led by @mmasoura.bsky.social, to find out! www.biorxiv.org/content/10.1...

Promoter-proximal gatekeepers restrict pleiotropic enhancer inputs to achieve tissue specificity

Developmental enhancers are central regulatory elements that can activate multiple genes, yet how they selectively regulate one gene over its neighbours remains unclear. Using the Drosophila twist E3 ...

biorxiv.org

Merci au @cnrsbiologie.bsky.social de mettre en avant notre travail! @baalberti.bsky.social @paulvilloutreix.bsky.social @igflyon.bsky.social @ensdelyon.bsky.social

CNRS Biologie@cnrsbiologie.bsky.social · last yr.

Un embryon virtuel pour cartographier l’activité des régions régulatrices du génome 🤝 @yghavi.bsky.social @cnrs-rhoneauvergne.bsky.social 👉 Lire l'article dans @narjournal.bsky.social buff.ly/e41cZQD

🚨 Our paper is out! 🚨 Check how spatial-scERA can predict enhancer activity in a virtual Drosophila embryo. Very proud of this first step in the research world published in @narjournal.bsky.social Thanks to @yghavi.bsky.social, @paulvilloutreix.bsky.social and all the scientists who made it real!

Yad Ghavi-Helm@yghavi.bsky.social · last yr.

Now available in its final form @narjournal.bsky.social ! doi.org/10.1093/nar/... Find out how we can reconstruct enhancer activity in vivo in the Drosophila embryo using scRNAseq data and Optimal Transport.