A huge thank you from the Whelan lab for an excellent #MEEHubs26 conference! Amazing talks, chats, & intl networking! We’re so thankful to have a chance to showcase our work with posters from @ambercutcliffe.bsky.social @fionapoulter.bsky.social @rebeccawallis.bsky.social Michelle Hardman… [1/2]
Rebecca Wallis D
@rebeccawallis.bsky.social
📍 UoM PhD in Microbiology in the Whelan Lab BIST MSc at CRG institute https://pyrisentinel.eu Harry Smith Studentship in the Whelan lab BSc Biotech & CompSc at UoNottingham Pangenome, metagenomics, microbiome 🧬🧫 She/Her
Any ideas what this might be? Growth on MSA media in anaerobic conditions. @contamclub.bsky.social 🌾🍂
Today is #CFWeek and the Whelan lab are in yellow for #WearYellowDay to raise awareness and funds for the life-limiting genetic condition Cystic Fibrosis (CF). CF is without a cure and dominates thousands of lives everyday. Explore @cysticfibrosis.org.uk's great resources to learn more 💛🧬
Enjoyed presenting a poster for my PhD project at #ECFS in Lisbon today! Will be around for the rest of today and tomorrow for any further discussions :) @pulse-cf.bsky.social @cysticfibrosis.org.uk @lifearc.bsky.social
In last week’s seminar we heard from @rebeccawallis.bsky.social about her work on the ecology and evolution of pathogens in CF 🫁 And @flanagella.bsky.social taught us about the importance of strain context in antibiotic resistance 💊 Thank you to @microbesng.bsky.social for our snacks!
📣 The Whelan lab is hiring a bioinformatics postdoc 📣 Together with @fabricejpierre.bsky.social, we are offering a 1-year bioinformatic PDRA position in comparative genomics of Pseudomonas aeruginosa. To find out more please visit whelanlab.co.uk/contact/. Applications close 3 April 2026!
Research Associate in Microbial Genomics:Manchester
This postdoctoral research position is part of a Cystic Fibrosis Canada Early Career Investigator Award funded for 3-years led by Dr. Fabrice Jean-Pierre and Dr. Fiona Whelan. The aim of this project is to identify the genetic changes that arise in the Pseudomonas aeruginosa genome following perturbations – such as antibiotic treatment – in an in vitro system. The PDRA will use a large dataset of P. aeruginosa genomes and experimental metadata to predict key mutationsto the organism.
jobs.manchester.ac.uk
For anyone in the bioinformatics/ evolutionary biology world my friend and previous colleague has created this blog with some very nice resources for getting into the area! 🧬 sequence-gazing.co.uk #bioinformatics #evolutionarybiology
- Sequence Gazing
Welcome to sequence-gazing!
sequence-gazing.co.uk
Whelan lab cake for the win at the Division of Evolution, Infection and Genomics and MCF Winter Celebration 🥳 #bakeoff #whelanlab
🎓 Huge congrats to our two @bist.eu Master’s students, Igor Trujnara and @rebeccawallis.bsky.social who successfully defended their theses this week! 🧬💻Igor explored Large Language Models for genome annotation, while Rebecca investigated microbial biodiversity in Pyrenean lakes🏔️. @crg.eu @upf.edu
Had a great time at the Computational Symposium- such a valuable opportunity to connect with colleagues, hear about exciting projects, and share progress on my master’s research! Presenting my work on the Pyrenean Lake microbiome has been invaluable for gathering feedback and ideas for my analysis 🙂
This week, we had a great time attending the 19th Computational Genomics Symposium at @prbb.org, a very nice opportunity to catch up with colleagues 💻🧬☀️ @crg.eu
Excited to be at #aquaecomics this week! Looking forward to networking and hearing insights relevant to my master project within PyriSentinel (pyrisentinel.eu), under @hannahbenisty.bsky.social 🧬⛰️
PyriSentinel – Exploring the invisible diversity of the Pyrenean lakes
pyrisentinel.eu
🚨 The Whelan lab is currently recruiting for a 6-week summer undergraduate student as part of the Lister Institute's Summer Studentship scheme. 🚨 The student will work along side a Postdoc to study interactions between pathogens from the cystic fibrosis microbiome. More info & to apply please see:
Lister Summer Studentship on Pathogen Interactions in Cystic Fibrosis:Oxford Road
jobs.manchester.ac.uk
As part of the BIST master, I have collaborated with some fellow students to produce a podcast exploring scientific careers. From venture capital to baking, find out the possibilities and how people transferred out of academia: beyondthebenchpodcast.wordpress.com/guests/
Guests | Episodes
Aleksej Drino Though his path had started with a BSc in Molecular Biology and Physiology at the Faculty of Biology, University of Belgrade, Aleksej moved to Vienna to pursue a PhD at the Medical Un…
beyondthebenchpodcast.wordpress.com
I have received the Accreditation Top Project Award from the Royal Society of Biology! This is for my BSC Hons dissertation at the University of Nottingham, where I investigated the role of RNA-Binding proteins in Arabidopsis Thaliana. A big thank you to my supervisor Rupert Fray and the lab!
I keep recommending this website for multivariate analyses for microbial ecology: sites.google.com/site/mb3gust...
GUSTA ME
Welcome to the GUide to STatistical Analysis in Microbial Ecology (GUSTA ME)! This guide contains descriptions of a range of analysis techniques used in microbial ecology. Before exploring our content...
sites.google.com
My poster (85) is up for today and tomorrow! Happy to chat about plasmids and transposons! 🧬🧫🧬🧫 #Microbio24
I had lots of fun presenting a poster at #microbio24 of my Harry Smith Studentship work, investigating ASM for culturing the Cystic Fibrosis lung microbiome. Thank you to everyone who came by! And a big thank you to my amazing supervisor @whelanfj.bsky.social for the continuous support! 🧬🧫
Can’t wait for #microbio24 to kickoff!! We’ll soon be hiring in PDRA and tech roles in my group at U of Manchester on projects investigating microbial interactions in the CF lung. Please come say hi if you want to learn more!
MicroSoc Harry Smith student @rebeccawallis.bsky.social will present her work on using ASM to culture the cystic fibrosis lung microbiome this afternoon at poster 207 #microbio24